PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892300.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family DBB
Protein Properties Length: 212aa    MW: 23455.4 Da    PI: 6.2961
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++lfC  ++  lC++C ++ H
  XP_015892300.1  4 LCDVCESAAAILFCAADEASLCRSCDDKVH 33
                    7*************************9998 PP
2zf-B_box27.46.8e-095291237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  XP_015892300.1 52 DVPRCDICENAPAFFYCEIDGTSLCLQCDMVVHVGgkrtH 91
                    5799**************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.911147IPR000315B-box-type zinc finger
SMARTSM003361.2E-7147IPR000315B-box-type zinc finger
CDDcd000216.81E-6345No hitNo description
PfamPF006435.5E-6341IPR000315B-box-type zinc finger
PROSITE profilePS501199.035196IPR000315B-box-type zinc finger
SMARTSM003363.0E-125196IPR000315B-box-type zinc finger
PfamPF006434.2E-75291IPR000315B-box-type zinc finger
CDDcd000217.91E-85484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EASLCRSCDD KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGTSLCLQCD MVVHVGGKRT HGRYLLLRQR VEFPGDKPGH LEELGLQPLD  120
SNDVRRDRIQ PSKFTARENQ QNHSVSPVPV LDNNINSDGK MENKLIDLNA RPQRIHGQAS  180
TNQEQGMDVL SGSNHESASV VPVGSFKREP EK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892300.11e-157B-box zinc finger protein 19 isoform X1
SwissprotC0SVM53e-87BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1R3HVT31e-137A0A1R3HVT3_COCAP; Zinc finger, B-box
STRINGXP_002512996.11e-134(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-89DBB family protein