PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892262.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 552aa    MW: 60852.7 Da    PI: 7.4541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15345392455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +    +k  +Ka++L +A+eY+ksLq
  XP_015892262.1 345 VHNLSERRRRDRINEKMRALQELIPRC----NKVSDKASMLDEAIEYLKSLQ 392
                     6*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.9E-21338400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-20339408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.441341391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-15344396No hitNo description
PfamPF000104.1E-13345392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-15347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MNHCVPDFEM EEDYPIPSSS GLTRPRKSPL PDNDIMELLW QNGQVVMQSQ NQRSNRKISP  60
ATKYDTVIPA DMEIRSSSQG QVHGTATQHH HQPQHQHQHQ QQLFMQEDEM ASWLHYPLVD  120
DSSLDHNFCS DLLYPTSCVN TANSAPLPAR TPPHVSDVRP ATMPPSYAPR PPIPPPARIE  180
PESKLQSFQQ LSSRNKAPRL ESRPSSSRSV MKESTVVDSS DTPAVGQRSQ LMEMMRRNSA  240
ELSNANLRCG TVSGGGGVAA TTSSGGGKDL VTCDMTVTSS PGGSSASAEL IVAAQKPPAA  300
EDRKRKGREG DDTECCQSED VDFESAEGKK RERSTSTKRS RAAEVHNLSE RRRRDRINEK  360
MRALQELIPR CNKVSDKASM LDEAIEYLKS LQLQVQMMSM GCGMVPMMFP GMQQYMPPMG  420
MGIGMGMGMG MEMGMNRPIM TFPNVLAGSA MTAPGATAHL GPRFPMPPFH MPHVPPPTDP  480
SRIHAPNQSD QMLNSLGTLN TNQSRIPNFS DPYQQYLGQH HMQLPLHQNQ ATAQPCISKP  540
GTSRGPENLQ NR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892262.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892262.10.0transcription factor PIF1 isoform X1
RefseqXP_024933167.10.0transcription factor PIF1 isoform X1
TrEMBLA0A2P5BRH60.0A0A2P5BRH6_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010109673.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46073351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-30phytochrome interacting factor 3-like 5