PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015892240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 22225.2 Da PI: 7.3128 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.6 | 9.2e-13 | 97 | 125 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 +++ LA++l+L+ rqV vWFqNrRa+ k XP_015892240.1 97 GQKQALADELNLKPRQVEVWFQNRRARTK 125 5899***********************98 PP | |||||||
2 | HD-ZIP_I/II | 92.2 | 6e-30 | 87 | 160 | 17 | 90 |
HD-ZIP_I/II 17 sFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 + eee+ e +K++la eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke eeLr++ XP_015892240.1 87 HQEEENGSERGQKQALADELNLKPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCENLSEENRRLKKELEELRSQ 160 23445567889************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 6.7E-4 | 62 | 131 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 96 | 125 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-10 | 96 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.8E-10 | 97 | 125 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.05E-7 | 98 | 128 | No hit | No description |
PROSITE profile | PS50071 | 12.276 | 98 | 127 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 102 | 125 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.7E-17 | 127 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.2E-9 | 127 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MRDNILEACN TGLQLGLGLG EYPIISHERK KKDNDNNYNS NSYNNNNDKP VVCLDLSFSL 60 CPKREAPVVD LNIADQASSL KKKVDHHQEE ENGSERGQKQ ALADELNLKP RQVEVWFQNR 120 RARTKLKQTE MDCEFLKKCC ENLSEENRRL KKELEELRSQ KIETSTTLYT THQIPKDEKL 180 MIICSSCEKI VK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | RRARTKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015892240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009342828.1 | 2e-53 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
TrEMBL | A0A498HPF7 | 3e-49 | A0A498HPF7_MALDO; Uncharacterized protein | ||||
STRING | XP_009342828.1 | 1e-52 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-23 | homeobox from Arabidopsis thaliana |