PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 752aa MW: 86081.2 Da PI: 6.6902

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015892031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.3e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel XP_015892031.1 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPTDDGKLQRNRKSSRCGCQAYMRIVKRAdfdVPEWRITGFSNIHNHELL 152 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.3E-23	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.545	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	560	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-5	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MSELRSLVKE TSENGMGSSP DDIGTVEEVP EETILCRQTS VNLVPFVGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPTDDGKL QRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAFCTMTADD KSRICMYAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLLK MCKDKKDKDP 240 NFKYNFQIDT NNRLESIAWS YSSSIRSYEA FGDAIIFDTT HRLEGYDMVM GIWLGVDNHG 300 MNCFFGCVLL RDENMQSFSW ALKTFLEFVN GKAPETILTD QNMWLKEAIA IEMPRTKHAF 360 CIWHIIARFS DWFSVVLGSQ YDTWKAEFHR LYNLDSVEDF EVGWKEMVDA YRLQGNKHIV 420 SLYALRMYWA LPYLRCYFFA GMTCTFQSDS INAYIQRVLG AQSLLHNFVE QVAAIVDIKD 480 EGGAQQKMQR KVQKVSLKTG SPIESHAVAV LTPYAFCKLQ EELVLAPQYA SLMVDDTYFI 540 VRHHTEMDGG CKVLWSPHDE FISCSCHQFE FSGIICRHVL RVLSTNNCFH IPDRYLPIRW 600 RNVPFTKPFQ GQQSGKVQLL QSMVSTIITE SVETEERLDV ACDQIAVILS RIKEFPGPED 660 CANHIGYNRQ SDSLILPEVE DSDDIVQGYA TGNSHESITL GKLKERRYRD GIDIFRKRRR 720 CSVPCCGQFG HDATDCPMIE DGGLNGDGLG FL

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MSELRSLVKE TSENGMGSSP DDIGTVEEVP EETILCRQTS VNLVPFVGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPTDDGKL QRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRI TGFSNIHNHE LLKSNEVQLL PAFCTMTADD KSRICMYAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLLK MCKDKKDKDP  240
NFKYNFQIDT NNRLESIAWS YSSSIRSYEA FGDAIIFDTT HRLEGYDMVM GIWLGVDNHG  300
MNCFFGCVLL RDENMQSFSW ALKTFLEFVN GKAPETILTD QNMWLKEAIA IEMPRTKHAF  360
CIWHIIARFS DWFSVVLGSQ YDTWKAEFHR LYNLDSVEDF EVGWKEMVDA YRLQGNKHIV  420
SLYALRMYWA LPYLRCYFFA GMTCTFQSDS INAYIQRVLG AQSLLHNFVE QVAAIVDIKD  480
EGGAQQKMQR KVQKVSLKTG SPIESHAVAV LTPYAFCKLQ EELVLAPQYA SLMVDDTYFI  540
VRHHTEMDGG CKVLWSPHDE FISCSCHQFE FSGIICRHVL RVLSTNNCFH IPDRYLPIRW  600
RNVPFTKPFQ GQQSGKVQLL QSMVSTIITE SVETEERLDV ACDQIAVILS RIKEFPGPED  660
CANHIGYNRQ SDSLILPEVE DSDDIVQGYA TGNSHESITL GKLKERRYRD GIDIFRKRRR  720
CSVPCCGQFG HDATDCPMIE DGGLNGDGLG FL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	715	719	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015892031.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892031.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	F6HZ84	0.0	F6HZ84_VITVI; Uncharacterized protein
STRING	VIT_07s0005g01120.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]