PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

SBP

Protein Properties

Length: 1018aa MW: 112964 Da PI: 6.674

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.3	1.6e-41	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_015891807.1 153 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 230 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.6E-34	147	215	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.385	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.28E-39	152	234	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.9E-30	154	227	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.8E-5	754	900	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.73E-6	781	898	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.00E-5	787	898	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence Send to blast
MEARFGGHHF YGVSSGKRTL EWDLNDWKWD GDLFIATPLN QVPLDNSMGR QFLPLGSAGI 60 PVTGGSSNSS SSCSEEGGNV GTDKEKREHE KRRRVLEVED EDRLNQEGAG TLSLKLGGHG 120 HGYQVSEREG GNWEGASGKK TKLGGGATPN RAVCQVEDCG ADLSNAKDYH RRHKVCEMHS 180 KASRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTNP DTVVNGNSLN 240 DDQTSGYLLI SLLRILSNMH SNRSDHNTDQ DLLSHLLRSL ANQTSEHGGK SVAGLLQGRQ 300 NLLTDGTSVG HSEAVNYLTN GPQGHPRPVT QHHQAVSVSG VAQQGMHEHN ASAGNIQATC 360 SLKPNVLNKP PAYLEGRDTT AGQIKMNNFD LNDIYIDSDD GIENPERSPA PTNVGVSSLD 420 CLSWVQQGSH QSSPPQTSGN SDSASPQSPS SSSGEAQSRT DRIVFKLFGK EPNDFPLVLR 480 AQILDWLSHS PSDIESYIRP GCIFLTIYLR QTEAAWDDLC YNLSSSLSRL LDVSDDTFWR 540 TGWVYIRVQN QIAFIYNGHV IIDTSLALRS SNYSKILSVK PIAISASEKA QFSVRGINMA 600 RPATRLFCAL EGKYLVQEAT QDLMDSVDSV KEHDEQSINF SCSIPLVNGR GFVEIEDHGY 660 SSSFFPFIVA EEDVCSEIRV LESALEYAET DANLRGSGNI VTQNQAMDFI SEMGWLLHRS 720 QLRSRLGHLD PNADPFPLKR FKWLMEFSLD HDWCAVVRKL LDILLDGSVS EGEHPSLSLA 780 LLDMGLLHRA VRKNSRPLVE FLLRYVPKNI TRKLESEDNV TANGVNGNFL FRPDVTGPAG 840 LTPLHIAAGK DDSEDVLDAL TDDPKMVGIE AWKSALDSTG STPEDYARLR GHYSYIHLVQ 900 RKINKRPTTA EHVVVDMPNN VNDLIVNQKQ NNEFRSSSSS LDIGRSELKW NHQQQCRVCD 960 RKVGYGSRSR SLLYRPAMLS MVAIAAVCVC VALLFKSSPE VVYIFRPFRW ELLEYGTS

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence Send to blast

MEARFGGHHF YGVSSGKRTL EWDLNDWKWD GDLFIATPLN QVPLDNSMGR QFLPLGSAGI  60
PVTGGSSNSS SSCSEEGGNV GTDKEKREHE KRRRVLEVED EDRLNQEGAG TLSLKLGGHG  120
HGYQVSEREG GNWEGASGKK TKLGGGATPN RAVCQVEDCG ADLSNAKDYH RRHKVCEMHS  180
KASRALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNKRRRKTNP DTVVNGNSLN  240
DDQTSGYLLI SLLRILSNMH SNRSDHNTDQ DLLSHLLRSL ANQTSEHGGK SVAGLLQGRQ  300
NLLTDGTSVG HSEAVNYLTN GPQGHPRPVT QHHQAVSVSG VAQQGMHEHN ASAGNIQATC  360
SLKPNVLNKP PAYLEGRDTT AGQIKMNNFD LNDIYIDSDD GIENPERSPA PTNVGVSSLD  420
CLSWVQQGSH QSSPPQTSGN SDSASPQSPS SSSGEAQSRT DRIVFKLFGK EPNDFPLVLR  480
AQILDWLSHS PSDIESYIRP GCIFLTIYLR QTEAAWDDLC YNLSSSLSRL LDVSDDTFWR  540
TGWVYIRVQN QIAFIYNGHV IIDTSLALRS SNYSKILSVK PIAISASEKA QFSVRGINMA  600
RPATRLFCAL EGKYLVQEAT QDLMDSVDSV KEHDEQSINF SCSIPLVNGR GFVEIEDHGY  660
SSSFFPFIVA EEDVCSEIRV LESALEYAET DANLRGSGNI VTQNQAMDFI SEMGWLLHRS  720
QLRSRLGHLD PNADPFPLKR FKWLMEFSLD HDWCAVVRKL LDILLDGSVS EGEHPSLSLA  780
LLDMGLLHRA VRKNSRPLVE FLLRYVPKNI TRKLESEDNV TANGVNGNFL FRPDVTGPAG  840
LTPLHIAAGK DDSEDVLDAL TDDPKMVGIE AWKSALDSTG STPEDYARLR GHYSYIHLVQ  900
RKINKRPTTA EHVVVDMPNN VNDLIVNQKQ NNEFRSSSSS LDIGRSELKW NHQQQCRVCD  960
RKVGYGSRSR SLLYRPAMLS MVAIAAVCVC VALLFKSSPE VVYIFRPFRW ELLEYGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	144	227	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	90	94	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891807.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF190665	6e-87	KF190665.1 Frangula alnus subsp. alnus clone Contig10688 polymorphic genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891807.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A2P5ETD2	0.0	A0A2P5ETD2_TREOI; SBP-box transcription factor
STRING	XP_010091413.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]