PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

WRKY

Protein Properties

Length: 335aa MW: 37135.4 Da PI: 6.9199

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891697.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.2	4e-34	174	231	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers +dp+vv++tYeg+H+h+ XP_015891697.1 174 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERSFSDPSVVVTTYEGQHTHP 231 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	2.8E-118	1	335	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	7.2E-35	158	233	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-29	165	233	IPR003657	WRKY domain
PROSITE profile	PS50811	32.03	168	233	IPR003657	WRKY domain
SMART	SM00774	6.9E-41	173	232	IPR003657	WRKY domain
Pfam	PF03106	9.3E-27	174	231	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0009733	Biological Process	response to auxin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MEKREIIKME ENYNSIGSLT FGEGGGGYTL SGMFDLCEAE KSSSLGFMEL LGVQDISPCL 60 FDFPHTLTAT SSSSSTLLVP SAPTIIPTPA ARKDSSEALN QPATPNSSSI SSASSEAINE 120 EQTKTDNQDQ DEGEEEHEDH QKTKKQLKAK KTNQKRQREP RFAFMTKSEV DHLEDGYRWR 180 KYGQKAVKNS PFPRSYYRCT STSCNVKKRV ERSFSDPSVV VTTYEGQHTH PSPVMARPSH 240 AAAVLPPAST ACATTNFAMP MPTPTTISHY HHHQQNHPFL DNLTPSFNFG YQGSTNSKTN 300 TILHERRLCN LAGPSLLADH GLLQDIIPSH MLKQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-26	166	233	10	77	Probable WRKY transcription factor 4
2lex_A	5e-26	166	233	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00069	PBM	Transfer from AT2G47260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891697.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377433	5e-88	GQ377433.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891697.1	0.0	probable WRKY transcription factor 23
Swissprot	O22900	3e-73	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A386IPJ0	1e-140	A0A386IPJ0_ZIZJJ; WRKY transcription factor 60 (Fragment)
STRING	cassava4.1_012593m	1e-110	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-57	WRKY DNA-binding protein 23

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]