PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015891593.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 406aa MW: 45007.8 Da PI: 6.4635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015891593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.7e-07	285	330	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +r RR +i ++ + L+ellP+ a a++L +++YIk+Lq XP_015891593.1 285 ATLTDRHRRVKIAERVNALQELLPHsA------EGGQAAVLDDVIDYIKYLQ 330 66789******************44......44579***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.81E-6	278	334	No hit	No description
SuperFamily	SSF47459	5.23E-10	279	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-11	279	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.017	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	284	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-5	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MKFCPQGYNG LLRKKLPLET SSLPVWPVRT SISEAKAGTF HSSTSLSLSL SLLFSLSQSD 60 RTLSHTHPQR HSSLKVEEVS ALVTMEGQSN QDNFMHLMSL NLGGFNVANE VQNVPGHDSK 120 HVPMAAGSGW NRTDALNIPW WIQNPEAAHD YVKFNAESSS FLSRASSENV LESLHFPVGG 180 TNAFHAVAVN DKLELSCAPK STDASIDVDA LKTKFLRSHD EELENKPTIK KHEIHAENPS 240 SWTQKSNVDS YNNVSQDEPR ARVAASGFMS QQQRNTISKD SKDKATLTDR HRRVKIAERV 300 NALQELLPHS AEGGQAAVLD DVIDYIKYLQ LQIKDLSKRR LGGEAATEPI IFLEGYGHYV 360 CNQQMLSEPL EEMMGKLLAE NPLAAIQLLE MKGVLLMPMD FAEGLH

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MKFCPQGYNG LLRKKLPLET SSLPVWPVRT SISEAKAGTF HSSTSLSLSL SLLFSLSQSD  60
RTLSHTHPQR HSSLKVEEVS ALVTMEGQSN QDNFMHLMSL NLGGFNVANE VQNVPGHDSK  120
HVPMAAGSGW NRTDALNIPW WIQNPEAAHD YVKFNAESSS FLSRASSENV LESLHFPVGG  180
TNAFHAVAVN DKLELSCAPK STDASIDVDA LKTKFLRSHD EELENKPTIK KHEIHAENPS  240
SWTQKSNVDS YNNVSQDEPR ARVAASGFMS QQQRNTISKD SKDKATLTDR HRRVKIAERV  300
NALQELLPHS AEGGQAAVLD DVIDYIKYLQ LQIKDLSKRR LGGEAATEPI IFLEGYGHYV  360
CNQQMLSEPL EEMMGKLLAE NPLAAIQLLE MKGVLLMPMD FAEGLH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015891593.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015891593.1	0.0	uncharacterized protein LOC107426023 isoform X2
TrEMBL	A0A2N9GWH3	3e-97	A0A2N9GWH3_FAGSY; Uncharacterized protein
STRING	XP_010090380.1	8e-91	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12164	24	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-22	LJRHL1-like 2