PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890813.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 374aa    MW: 43425.2 Da    PI: 10.4529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3443.9e-1498192199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     +f v +++++l+ g l +p kf++++g+    +  ++l+   sgr We+kl  +k +++ ++l +GWk+F +   ++ g f++Fk++g+ +f  +
  XP_015890813.1  98 WFIVVVRESTLQDGKLNIPEKFVSRNGIR--LKELIVLKVgNSGRYWEMKL--EKEDDGkVWLCQGWKDFEDHYSIQHGNFLLFKYQGNYNF--K 186
                     5677889999****************876..444677776699********..6666555**************************998888..7 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v +f+k
  XP_015890813.1 187 VIIFNK 192
                     877766 PP
2B360.13.9e-19283372898
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +v ++  + +pkkf+e+h g+  +s+ ++l++++g +W v++ +   +kk+ + + t GW++Fv++n++++gD++ F+l++ ++ +++v++f 
  XP_015890813.1 283 TYVVQR-YMNIPKKFFENHLGD--KSTNVILKNSKGGTWLVQYVFkivKKKPIGKFCT-GWNKFVRDNNVQVGDVCHFELMKGHQISFRVRIFP 372
                     455555.499*********777..5678***************887777777777666.*********************98888888999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-6359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-5459IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-2193193IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2094192IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.42498193IPR003340B3 DNA binding domain
CDDcd100172.46E-1199191No hitNo description
SMARTSM010196.6E-1299193IPR003340B3 DNA binding domain
PfamPF023622.9E-1199192IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-21269371IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-21269371IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-17274372No hitNo description
PROSITE profilePS5086313.648275374IPR003340B3 DNA binding domain
SMARTSM010191.9E-12276374IPR003340B3 DNA binding domain
PfamPF023623.8E-16285372IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVNYFFKVVL HEALRDGKLK IPPKFVRTNG KSLEDSNVVL EARVDGEEWE VKLEKHGGKS  60
LHFPSSLSVF LPLFLRKSLT HQLATTFHSL PLRTRHHWFI VVVRESTLQD GKLNIPEKFV  120
SRNGIRLKEL IVLKVGNSGR YWEMKLEKED DGKVWLCQGW KDFEDHYSIQ HGNFLLFKYQ  180
GNYNFKVIIF NKTATEIAYP TKSKSYRPTA NDHDETDSDS GSVQILDVPN TKKAKPTKGR  240
KIKSTKRFKH AVDMDTDQKA TAIQRAEVFK SKNPFFWISL PTTYVVQRYM NIPKKFFENH  300
LGDKSTNVIL KNSKGGTWLV QYVFKIVKKK PIGKFCTGWN KFVRDNNVQV GDVCHFELMK  360
GHQISFRVRI FPTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890813.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932166.10.0B3 domain-containing protein Os11g0197600-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-29B3 family protein