PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890704.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 573aa    MW: 62231.4 Da    PI: 8.6567
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.6e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_015890704.1  94 FICEICNKGFQRDQNLQLHRRGH 116
                     89*******************88 PP
2zf-C2H212.50.00043170192123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_015890704.1 170 WKCDKCSKRYAVQSDWKAHSKTC 192
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-593116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-793116No hitNo description
SMARTSM003550.02294116IPR015880Zinc finger, C2H2-like
PfamPF121717.0E-594116IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84594116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM00355250135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.9E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.1E-7165190No hitNo description
SMARTSM00355140170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MIKGLLFQQQ QQQQQQAMDE NMSNLTSASG EAASVSSGNR TEIGTNYPSQ YFAPPPQTQI  60
QPPLKKKRNL PGNPDPDAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRTSKEI KKKVYVCPET SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA  180
VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIS ANPVLLSSQQ  240
QQQQHPGGAS STSHMNLQIP QFNHPHHHQE LHGFALKKEN FSSLRPEIPP WLAFNNAGPP  300
PPHLDISSSS SIFSTTTRLD QDLPNIHETH HPNPNPSLGP TLPPYQPTPS PHMSATALLQ  360
KAAQMGATMS SKTTSTTTAT AAASSSSSPS TMIRAHHQLH VSSSADHDSG NNNSNGNFGL  420
NLSSRDEMLL GTAGFAHGLP AFGNNKAATI SSASPSVSAS ATTANTLPLP PPPPHPSLLH  480
DMMNSLSSGT GFEGTCFEDA FSGILSNSKK LDHKTNGGGD ENGGSCGGDQ GLTRDFLGLR  540
ALSHSDIMSF AGLGNCMNTS REHENQTHKP WQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35166227364Zinc finger protein JACKDAW
5b3h_F4e-35166227364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890704.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1489181e-112AC148918.3 Medicago truncatula chromosome 2 clone mth2-44o11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890704.10.0protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-128IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2I4H0500.0A0A2I4H050_JUGRE; protein indeterminate-domain 7-like isoform X1
STRINGcassava4.1_004983m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-116indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]