PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890697.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 394aa    MW: 43392.2 Da    PI: 6.8348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++++  +G g+W+++++  g+ R++k+c++rw +yl
   XP_015890697.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding48.22.5e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
   XP_015890697.1  67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.595961IPR017930Myb domain
SuperFamilySSF466891.39E-2911108IPR009057Homeodomain-like
SMARTSM007176.9E-141363IPR001005SANT/Myb domain
PfamPF002495.2E-161461IPR001005SANT/Myb domain
CDDcd001672.79E-121761No hitNo description
PROSITE profilePS5129425.20962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002493.8E-1467110IPR001005SANT/Myb domain
CDDcd001673.44E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLMAHE  120
AAHHHLVPSL AAASISDHIH NPSCSDHHEA AAAAFFTFNP NHPDFINLTS SHHQLQDQQQ  180
LYLSINQTLR NINPQHQGLL CQNINNDDAN DQLQFAPSLS NSSSNPFSSS WSTLGCQLPT  240
PIQQDHHQNF FCINNEASPP NYVGGGGGDK EMMDIPSVAF SSCENPLMAA SIMDGNNCKV  300
MTAYSSCTPS HDHHQLDPPC NIPSTGSYLQ DSFVPNTNNN QMDYIEAIVS SLPSSSSSST  360
SSSSSSSSSA LSHLPSSCQF FSNPNLLIPS RWDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890697.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4765815e-39AM476581.2 Vitis vinifera contig VV78X241396.15, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890697.10.0transcription factor MYB26-like
TrEMBLA0A2P5BE923e-98A0A2P5BE92_PARAD; MYB transcription factor
STRINGPOPTR_0001s20370.11e-90(Populus trichocarpa)
STRINGcassava4.1_009996m1e-90(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-81myb domain protein 26