PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 259aa MW: 29515.2 Da PI: 6.2176

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.5	6.1e-40	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++++am+++++++++ra+dPv G++++i+++q+q+e kael+ XP_015890683.1 16 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKKLDQPDKDKAMHTIIFQSDVRANDPVGGCYRIIREYQRQIEYYKAELD 110 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_015890683.1 111 IVLHQ 115 88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.528	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.6E-37	16	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MTTSNIPTKG NGNTQACAAC KYQRRKCAPD CILAPYFPHD RQRQFLNAHK LFGVSNITKI 60 IKKLDQPDKD KAMHTIIFQS DVRANDPVGG CYRIIREYQR QIEYYKAELD IVLHQLAICR 120 AQAHHHVQVP EAAAVAGEPN LNCEMVNVVD PLSLYNNPMA MAMQPHYQCQ LQPQHESYVN 180 VVHDQGNHGL QEDVSSWVMQ DDSLHSLHTK QDINGDDHDC DEDIKPLFEV ACERNENKFD 240 TQDIVEHRFV PSPQLLTSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-26	12	110	7	105	LOB family transfactor Ramosa2.1
5ly0_B	9e-26	12	110	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890683.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890683.1	0.0	LOB domain-containing protein 22
Swissprot	Q9LRW1	7e-63	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2N9HL91	5e-96	A0A2N9HL91_FAGSY; Uncharacterized protein
STRING	XP_006466020.1	1e-90	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-65	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]