PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890673.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 280aa    MW: 30984.1 Da    PI: 10.0407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +        ++R+  ++k++w+++
   XP_015890673.1  5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPDfasflTHRSNIDLKDKWRNL 56
                     79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.758161IPR017930Myb domain
SuperFamilySSF466899.33E-17258IPR009057Homeodomain-like
SMARTSM007176.1E-9459IPR001005SANT/Myb domain
PfamPF002491.4E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-15556IPR009057Homeodomain-like
CDDcd116601.56E-21656No hitNo description
SuperFamilySSF467854.3E-15113195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.6E-16114181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.653116186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.5E-14116187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.7E-12118181IPR005818Linker histone H1/H5, domain H15
CDDcd000732.29E-10118178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPDFASF LTHRSNIDLK DKWRNLSVST  60
SSHGSKEKSR APKIKAIAAA QHVNIQNSAP AASLHRNASS DAVMDDPPNG LQDGKNAPRY  120
NAMIFEALST LKDTNGSDIG AILNFIEQKH EVPMPPNFRR LMSTRLRRLV TQGKLEKVLN  180
GYKIKKETPL AVKTPSPQQK DIRSRQSQNS GLKNSTQSVQ DAADTAAYKV ADAENKSFLA  240
AEAVKEAERI SKMAEDTESM LQLVKEMYEQ CSRGEIFLLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890673.10.0telomere repeat-binding factor 4
SwissprotF4I7L18e-89TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A2N9H5U01e-142A0A2N9H5U0_FAGSY; Uncharacterized protein
STRINGEOY271611e-140(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.17e-77MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]