PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HB-other

Protein Properties

Length: 1753aa MW: 197243 Da PI: 4.9466

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.9e-18	34	89	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r++L++klgL++rq ++WF+ rR k+kk XP_015890653.1 34 PKRQMKTPFQLETLEKAYALETYPSESMRADLSEKLGLSDRQLQMWFCHRRLKDKK 89 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-18	14	90	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.17E-16	23	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.665	30	90	IPR001356	Homeobox domain
SMART	SM00389	1.0E-17	32	94	IPR001356	Homeobox domain
Pfam	PF00046	3.9E-16	34	89	IPR001356	Homeobox domain
CDD	cd00086	1.23E-13	35	90	No hit	No description
SMART	SM00571	3.2E-22	533	592	IPR018501	DDT domain
PROSITE profile	PS50827	16.469	533	592	IPR018501	DDT domain
Pfam	PF02791	2.9E-16	534	589	IPR018501	DDT domain
Pfam	PF05066	5.6E-15	715	783	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.8E-8	924	964	IPR028942	WHIM1 domain
Pfam	PF15613	5.7E-13	1116	1188	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1753 aa Download sequence Send to blast
MEGGSEGEDH NIKNSENNNE SSKINNSNEG QSKPKRQMKT PFQLETLEKA YALETYPSES 60 MRADLSEKLG LSDRQLQMWF CHRRLKDKKE GGPPKKARKT VAALPESPID ELRAGHEPGS 120 DYGSGSGSGS SPFGHTELRN AVSRSVGDDM PMGRRYYESR QTIMELRAIA CVEAQLGEPL 180 RDDGPVLGIE FDPLPPDAFG APLAVAEQQK RSGHHPFEGK SYERHDAKSN KATTRVLYEY 240 PFLQDQSTSA VDVLPGRTSS FAVVNEQLSR AHVVQGQVSR VRLLSQQDKQ GVAFPSPPRD 300 DDRVPQRDSF TNSRMISDHP IIVSDNPYGS DGQIIPSDTV LRMERKRKSE EARLAKEVEA 360 HEIRLRKELE KQDNLRRKNE ERLRKEMEKQ DRERRKEEER LMREKQREEE RSRREQRREM 420 ERREKFLQKE SLRAEKRRQK EELRKEREAV RRKAAIEKAT ARRIARESME LIEDEQLELM 480 EIAAASKGLS SIISLDHDTL QNLESFRDLL GQFPPMSVQL KRPLAIQPWI NSEENIGNLL 540 MIWRFLITFA DVLELWPFTL DEFIQGFHDY DSRLLGEIHV ALLKLIIKDI EDVARTPSSG 600 LGTNQNGAAN PGGGHPQIVE GAYAWGFDIR NWQRHLNPLT WPEIFRQLAL SAGFGPHLKK 660 RSVSWPCLPD NHEGKGCEDV ISTLRSGSAA ENAFAIMQEK GLLLPRRSRH RLTPGTVKFA 720 AFHVLSLEGS KGLTVLELAD KIQKSGLRDL TTSKTPEASI SVALTRDAKL FERIAPSTYR 780 VRAAYRKDPA DAEAILSAAR KKVQIFENGF LAAEDADDVE RDEDSECDDV DEDPEVDELA 840 TPSTANRDSD QYNEVNTCLE SGKENLCNDP LNLQNEFDKD SSSVPLIASK DVDCSSATTE 900 QYVVGEDRNA SNPEEENMEI DESKSGESWT QGLTEGEYSD LSVEERLNAL VALIGIANEG 960 NSIRLVLEDR LEAANALKKQ MWGEAQLDKS RLKEENISKL DFPSSVGTKA EMHLASSVVE 1020 GSQSPLPDLD NRNIEASNRN SEASPSIAEN QKLVNVSHII PNDLNSVPAE KTSVAPDFSM 1080 GPDNFLTQQQ AFANKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASSND 1140 PGSGRIFVEL HDGNWRLIDT EEAFETLLGS LDSRGIRESH LRLMLQKIEA SFKENVRRNV 1200 QCLSTVGGNG TVVKNEVDEM NSSPDCHAAF DSPSSTLCGL NPDSIETSSS FRIELGKSET 1260 EKKAALRRYQ DFQKWMFKEC LNASTLYAMK CGKKRCAQLL EICDGCLTTY YFEDSHCLSC 1320 HQTFGTMGND FKFPQHVIQC KEKRKLELQD IHILDTALPL GNRLLKVLFA LIEVSVPLEA 1380 LQSSWMEDFR KNWGVKLNVS SSVEELLQIF TLFESVMKRD FLLSNFASTG ELLGSCSQPG 1440 AAAHDYSDPG SVTVLPWLPH TIAAVALRLF ELDASIIYVP HAKPEPVEAK EVKEYIKLPT 1500 RFAPSRNDKE IELAELSHRE HMKEENFAHL KSARNNYRRG KGGRDQRRGK KLQRRVNNSK 1560 SSAARKNART NENTTQGLRQ LGRRPLGQGG ARGRRTIRKR RVENRAVEET LLGHIADTRS 1620 SPESGGESPR NLDEEWDDEK INNINVKGDD VNSVEAVESD DNNAQAEEYE QGNWELGYDG 1680 VSGGWNGDLM EVSDEDVDAS EDDDDDDDNG IEEVGDGDSE EDVDVSEESD GIPNRIENDE 1740 GSESAVSEDY SDD

Sequence ? help Back to Top

Protein Sequence Length: 1753 aa Download sequence Send to blast

MEGGSEGEDH NIKNSENNNE SSKINNSNEG QSKPKRQMKT PFQLETLEKA YALETYPSES  60
MRADLSEKLG LSDRQLQMWF CHRRLKDKKE GGPPKKARKT VAALPESPID ELRAGHEPGS  120
DYGSGSGSGS SPFGHTELRN AVSRSVGDDM PMGRRYYESR QTIMELRAIA CVEAQLGEPL  180
RDDGPVLGIE FDPLPPDAFG APLAVAEQQK RSGHHPFEGK SYERHDAKSN KATTRVLYEY  240
PFLQDQSTSA VDVLPGRTSS FAVVNEQLSR AHVVQGQVSR VRLLSQQDKQ GVAFPSPPRD  300
DDRVPQRDSF TNSRMISDHP IIVSDNPYGS DGQIIPSDTV LRMERKRKSE EARLAKEVEA  360
HEIRLRKELE KQDNLRRKNE ERLRKEMEKQ DRERRKEEER LMREKQREEE RSRREQRREM  420
ERREKFLQKE SLRAEKRRQK EELRKEREAV RRKAAIEKAT ARRIARESME LIEDEQLELM  480
EIAAASKGLS SIISLDHDTL QNLESFRDLL GQFPPMSVQL KRPLAIQPWI NSEENIGNLL  540
MIWRFLITFA DVLELWPFTL DEFIQGFHDY DSRLLGEIHV ALLKLIIKDI EDVARTPSSG  600
LGTNQNGAAN PGGGHPQIVE GAYAWGFDIR NWQRHLNPLT WPEIFRQLAL SAGFGPHLKK  660
RSVSWPCLPD NHEGKGCEDV ISTLRSGSAA ENAFAIMQEK GLLLPRRSRH RLTPGTVKFA  720
AFHVLSLEGS KGLTVLELAD KIQKSGLRDL TTSKTPEASI SVALTRDAKL FERIAPSTYR  780
VRAAYRKDPA DAEAILSAAR KKVQIFENGF LAAEDADDVE RDEDSECDDV DEDPEVDELA  840
TPSTANRDSD QYNEVNTCLE SGKENLCNDP LNLQNEFDKD SSSVPLIASK DVDCSSATTE  900
QYVVGEDRNA SNPEEENMEI DESKSGESWT QGLTEGEYSD LSVEERLNAL VALIGIANEG  960
NSIRLVLEDR LEAANALKKQ MWGEAQLDKS RLKEENISKL DFPSSVGTKA EMHLASSVVE  1020
GSQSPLPDLD NRNIEASNRN SEASPSIAEN QKLVNVSHII PNDLNSVPAE KTSVAPDFSM  1080
GPDNFLTQQQ AFANKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASSND  1140
PGSGRIFVEL HDGNWRLIDT EEAFETLLGS LDSRGIRESH LRLMLQKIEA SFKENVRRNV  1200
QCLSTVGGNG TVVKNEVDEM NSSPDCHAAF DSPSSTLCGL NPDSIETSSS FRIELGKSET  1260
EKKAALRRYQ DFQKWMFKEC LNASTLYAMK CGKKRCAQLL EICDGCLTTY YFEDSHCLSC  1320
HQTFGTMGND FKFPQHVIQC KEKRKLELQD IHILDTALPL GNRLLKVLFA LIEVSVPLEA  1380
LQSSWMEDFR KNWGVKLNVS SSVEELLQIF TLFESVMKRD FLLSNFASTG ELLGSCSQPG  1440
AAAHDYSDPG SVTVLPWLPH TIAAVALRLF ELDASIIYVP HAKPEPVEAK EVKEYIKLPT  1500
RFAPSRNDKE IELAELSHRE HMKEENFAHL KSARNNYRRG KGGRDQRRGK KLQRRVNNSK  1560
SSAARKNART NENTTQGLRQ LGRRPLGQGG ARGRRTIRKR RVENRAVEET LLGHIADTRS  1620
SPESGGESPR NLDEEWDDEK INNINVKGDD VNSVEAVESD DNNAQAEEYE QGNWELGYDG  1680
VSGGWNGDLM EVSDEDVDAS EDDDDDDDNG IEEVGDGDSE EDVDVSEESD GIPNRIENDE  1740
GSESAVSEDY SDD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	89	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890653.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890653.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_024922307.1	0.0	homeobox-DDT domain protein RLT1 isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2P5CI27	0.0	A0A2P5CI27_TREOI; Octamer-binding transcription factor
STRING	XP_010111176.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1