PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890448.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 370aa    MW: 41128.1 Da    PI: 6.5746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11194240455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  XP_015890448.1 194 DHVLAERKRREKLSQRFIALSAVVPGL-----KKMDKASVLGDAIKYVKQLQ 240
                     58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.56E-12185243No hitNo description
PROSITE profilePS5088815.021190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17194251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-16195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-9195240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-15196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEIASAKWLS EFEMEDPTFI NQYNSLDYSL DGLNFQSFSS ESYSSYPNFN TPKCAPHQLL  60
STTPMETPHH QTTSIERPSK QLKSNSWNSC TTTHDHQIST KASSSSSSHL ISFENNSAEK  120
AVMPPTSEQY YASHGPIKPK NEVGSDGNMS VFPSLISRTS YETQNHSMKH TEGVKSSSTS  180
AGTMSRRTAI HAQDHVLAER KRREKLSQRF IALSAVVPGL KKMDKASVLG DAIKYVKQLQ  240
ERVNTLEEQA AKKTVESAVF VKRSLVSGDD ELSSSDENFD SCSDQPLPEI EARVSDKDVL  300
IRIHCEKHKG CLSNILSEVE KLPLTIVNSS VLPFGGSTLD ITIVAQMDVE FSMNVKDIVR  360
NLRQALLNFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13194249863Transcription factor MYC2
5gnj_B1e-13194249863Transcription factor MYC2
5gnj_E1e-13194249863Transcription factor MYC2
5gnj_F1e-13194249863Transcription factor MYC2
5gnj_G1e-13194249863Transcription factor MYC2
5gnj_I1e-13194249863Transcription factor MYC2
5gnj_M1e-13194249863Transcription factor MYC2
5gnj_N1e-13194249863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203ERKRRE
2199204RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890448.10.0transcription factor bHLH25-like
TrEMBLA0A2P5FHA11e-146A0A2P5FHA1_TREOI; Basic helix-loop-helix transcription factor
STRINGcassava4.1_010938m1e-139(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-68bHLH family protein