PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

XP_015890413.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

M-type_MADS

Protein Properties

Length: 236aa MW: 25883.8 Da PI: 9.4766

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015890413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.7	1.3e-07	59	95	9	45
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r v s+ + g+ K A E+++LC++e ++++s+ g+ XP_015890413.1 59 RRVAVSRPQSGLSKNACEVCTLCAVETTLVVLSPGGQ 95 788999999************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.57E-9	43	115	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.914	43	103	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.9E-6	57	97	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MASAVSGRKW ICGRNEKSWF YISLTSIVIQ TVITWLPLIM AGMGSKKTQK KTTRGTDARR 60 VAVSRPQSGL SKNACEVCTL CAVETTLVVL SPGGQAFPSG HPCADSGTNR LYRHVKIDAE 120 IIRDFEVRQE AVLHKLSKEC AHLHYQIEAE KKRGEKLKQM QVENPVPYLL DAPIESLNRQ 180 ELYTLKAMVE EVKEKVVKRR NELVAQASTP SSAADCPGTD PVGGNSSAGP RGHLGN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015890413.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890412.1	1e-177	agamous-like MADS-box protein AGL29 isoform X2
Refseq	XP_015890413.1	1e-177	agamous-like MADS-box protein AGL29 isoform X2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	2e-17	AGAMOUS-like 29