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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 297aa MW: 33039.2 Da PI: 8.4193 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.8e-19 | 148 | 202 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_015890394.1 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.5 | 5e-40 | 148 | 237 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eL+ +l XP_015890394.1 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELK-AL 237 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-18 | 135 | 198 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.85E-19 | 137 | 205 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.718 | 144 | 204 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-15 | 146 | 208 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.92E-16 | 148 | 205 | No hit | No description |
Pfam | PF00046 | 3.4E-16 | 148 | 202 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 179 | 202 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.8E-25 | 204 | 247 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.4E-9 | 204 | 238 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGFDDVCNTG LVLRLGFTAA QESCPSSKVD SNINERPKKT LVTNFSLSST SNFEPSLTLG 60 LSGTEPGHHH QQQQVVASSC RSSKIDVNKG CEESNNIDLY RQPSPHSAVS SFSSGRVKRE 120 RDLSSEEIEV ERVSSRVSDE DEDGSNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA 180 RQLNLRPRQV EVWFQNRRAR TKLKQTEVDC ELLKKCCETL TDENRRLQKE LQELKALKLA 240 QPLYMHMPAA TLTMCPSCER LGGGVGVGVV DGATKSPFSM APKPHFYNPF NNPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 204 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890394.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890394.1 | 0.0 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 1e-99 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2I4HM96 | 1e-155 | A0A2I4HM96_JUGRE; homeobox-leucine zipper protein HAT22-like | ||||
STRING | EOX91792 | 1e-148 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-81 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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