PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890378.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 350aa    MW: 39328.2 Da    PI: 4.9648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13172218455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++N+ f  L +++P +     kK +K+++L ++++YIk+Lq
  XP_015890378.1 172 DHVLAERKRRENLNKLFIALSTVVPGL-----KKTDKSSVLGETIKYIKQLQ 218
                     5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.796168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16172228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16172235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-11172218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.73E-13173222No hitNo description
SMARTSM003538.8E-15174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDDFYLPDED ELGTELMVAA FVEDLHQTIS NSESNTSYST PPLVSQSINN DNTTTSYTSM  60
EFHQRPPTNQ LNLNNNDQTS SVLDYKTNSE PLILSFGNSD LFNNVPDHHL HYKENIAIAG  120
FSGDLSSSSP VFNYSNINSS NANQFHEDEI IFREWSKKIS GGTTKPASQL RDHVLAERKR  180
RENLNKLFIA LSTVVPGLKK TDKSSVLGET IKYIKQLQEK EKKLEVQSAK KDIEQVVVVK  240
KTKIIVDDED ENDCSNETSS DSKEEWLPQI EAKVSGNNVL LKLHCKKQKG VLAKALSEMD  300
KYNLKVINTS AMPFGDLCLD ITIIAQMEQE CCAPLIKSLV RCLRAAFEQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890378.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890378.10.0transcription factor bHLH19-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-33bHLH family protein