PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 28332 Da PI: 9.8354 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.5e-14 | 144 | 190 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N+ f L +++P + kK +K+++L ++++YIk+Lq XP_015890377.1 144 DHVIAERKRRENLNKLFIALSTIVPGL-----KKTDKSSVLGETIKYIKQLQ 190 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.821 | 140 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 144 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-16 | 144 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-12 | 144 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.63E-11 | 145 | 194 | No hit | No description |
SMART | SM00353 | 1.3E-14 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEDSILTDDY EQSTELMIAA FVEGLQQTLS SESNSSSPTL DIKNSDSTVN AYMEDQRRLK 60 QRRTTMEHKN SEPLILSFNN PDFLRNSEYN KEDIAGFSRD LSSSSPVFQY SKHPFHANQE 120 DEIIFGQWSK NTTSTTKPAS QLRDHVIAER KRRENLNKLF IALSTIVPGL KKTDKSSVLG 180 ETIKYIKQLQ EKEKKLEVQS RKKAIEQVVI VRKSKMTTRK SGFHISKLKC PETMSCSGSI 240 ARNRREF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 62 | QRRLKQRR |
2 | 148 | 153 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890377.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024932363.1 | 1e-149 | transcription factor bHLH19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-18 | bHLH family protein |