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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890374.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | AP2 | ||||||||
Protein Properties | Length: 661aa MW: 73317.7 Da PI: 6.6661 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.8e-16 | 320 | 379 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_015890374.1 320 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 379 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 50.9 | 3.8e-16 | 422 | 473 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_015890374.1 422 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 473 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-16 | 320 | 389 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-13 | 320 | 379 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.85E-22 | 320 | 387 | No hit | No description |
PROSITE profile | PS51032 | 19.203 | 321 | 387 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-16 | 321 | 388 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-29 | 321 | 393 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 322 | 333 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-17 | 422 | 482 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-11 | 422 | 473 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.26E-25 | 422 | 483 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-17 | 423 | 481 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-33 | 423 | 487 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.834 | 423 | 481 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 463 | 483 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MKSMNNDDGN NNNWLGFSLS PNMKMEVSSD PHHHHQHQTH SSSSSSTSSA AVSHCVPTDF 60 FHSSPYGIYY GGVEGENGGF YSPLSVMPLK SDGSLCIMEA LSRSQPQAMV TTSTPKLEDF 120 FGGATMGTHH YESNDREAMA LSLDSIFYHQ NPENEPNDHN LLNQLQQNHP RHQQDQPHGQ 180 IENQHYSYYS ALRSQDLMLD NSKETHIADC NLQLPPMTDD GVSDMKSWVS RNYSANQVGC 240 MGDNGGESGS VGGMAYGDLQ SLSLSMSPGS QSSCVTGSQQ ISSTVTDCVA MDTKKRGPEK 300 VDHKQIVHRK SLDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY 360 DMEEKAARAY DLAALKYWGP STHINFPLEN YQKELEEMKN MTRQEYVAHL RRKSSGFSRG 420 ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFGTQEEA AEAYDIAAIK FRGLNAVTNF 480 DITRYDVDRI MTSNTLPAGE LAKRNKETTS GSEASDHNAG TNSSINEETK NNNEGGSDWK 540 MALYQSTQHL DEKPLCMETY KSQAYSVAPD NLIHHQEIED SAKMGAHLSN ASSLVTSLSS 600 SREGSPDKSS LPTLFGMPPS VSKFFSSSSP TNAVNSWIPS AQPRPTISLP HMPIFAAWTD 660 T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890374.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868187.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Refseq | XP_015890374.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-147 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2P5AUX3 | 0.0 | A0A2P5AUX3_PARAD; AP2/ERF transcription factor | ||||
TrEMBL | A0A2P5F313 | 0.0 | A0A2P5F313_TREOI; AP2/ERF transcription factor | ||||
STRING | VIT_07s0151g00440.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-133 | AP2 family protein |
Publications ? help Back to Top | |||
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