PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890310.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 295aa    MW: 32422.2 Da    PI: 10.1714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890310.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.2e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
   XP_015890310.1  5 KQKWTAEEEAALKAGVIKHGAGKWRTILTDPEfssilHLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.139161IPR017930Myb domain
SuperFamilySSF466891.01E-14265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-12456IPR009057Homeodomain-like
SMARTSM007171.9E-6459IPR001005SANT/Myb domain
PfamPF002491.5E-7555IPR001005SANT/Myb domain
CDDcd116602.62E-17657No hitNo description
PROSITE profilePS5150424.561116187IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.29E-18117196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-17119192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.3E-13119182IPR005818Linker histone H1/H5, domain H15
PfamPF005381.1E-10124180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILTDPEFSSI LHLRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRNPSTAK NENNPLAVAT VLPNDEEVVD AKPLAVSDVP LRITNSKEPV  120
ARLDNLILDA IINLKEPRGS DRAAIALYIE EQYWAPPNLK KLLSTKLKHM TANGKLIKVK  180
HRYRIAPSST SSEKRRSSSM LLLEGRKKDT LRAEKSDLNI LTKSQIDAEL TEMRSMTPQE  240
AAAAAARAVA EAEAAIAAAE EAAREAEEAE AEAEAAQVFA QAAMKALKCR TLHTR
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890309.10.0telomere repeat-binding factor 2-like isoform X2
RefseqXP_015890310.10.0telomere repeat-binding factor 2-like isoform X4
RefseqXP_024932634.10.0telomere repeat-binding factor 2-like isoform X1
RefseqXP_024932635.10.0telomere repeat-binding factor 2-like isoform X3
SwissprotQ9FJW54e-86TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2P5D0H91e-137A0A2P5D0H9_PARAD; Telomeric repeat-binding factor
TrEMBLA0A314YMK81e-137A0A314YMK8_PRUYE; Telomere repeat-binding factor 2
STRINGXP_008237807.11e-138(Prunus mume)
STRINGEMJ068341e-138(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-72telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]