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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890195.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | TALE | ||||||||
Protein Properties | Length: 855aa MW: 91977.6 Da PI: 7.3022 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3.1e-09 | 596 | 633 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_015890195.1 596 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 633 664459******************************88 PP | |||||||
2 | BELL | 122.8 | 1.4e-39 | 456 | 527 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ XP_015890195.1 456 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 527 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.9E-81 | 377 | 525 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-52 | 382 | 524 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 574 | 637 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 577 | 641 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.34E-13 | 577 | 638 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-17 | 579 | 644 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 580 | 643 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.4E-18 | 594 | 633 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MGIATQQPIV EPILSNSSKS YHSISVSNKS NSANSMSHDY HQSIFSFSNG FERSAAAAVT 60 HHHHDQHQQH QHHIAQQIRR EKLRVQGFEP PPLPLVGIDE EESGGLPVYE TAGMLSEMFN 120 FPQSATTAAE LLEQPMAPSF RSPRPPQQQQ QQQSAAATAE WYGSSRQGMV GGLLGPLGDT 180 KNHQNSRDSI GAQQQQHHHH HHHQIPSINA DSAAAMQLFL MNPQPRSPSP PPPAAAAATS 240 STLHMLLPNP STSLPGFTAS GGPGGGGAFG QYTWVPDHTG HEGATTAAQL NNPSEIGGVV 300 EGQGLSLSLS SSLQHLEAAK AEELRIGEGG LLYYNQAGGG GGGGSAQYPY KNLHLQGGGG 360 GLGQNHHQVH VGFGSSLGVV NVLRNSKHVK AAQELLEEFC SVGRGQFKKN KFTRNNNNNN 420 NNSNTNLSSN PGSSGGGGGG GSSSSSKDVP PLSAADRIEH QRRKVKLLSM LDEVDRRYNH 480 YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK DAISAQLKHS CELLGEKDGA 540 GSSGITKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL 600 HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE EMYQQETKEE DMPDEREREI 660 RNVQSSSSGH AAQTPMPTST SATPPSTTTA SASAAAPPAG APTTAAAAPT TTTPTGKRSD 720 FNAPDSDPSL LAINRQPFSE NQANNQHSSS NTVMSNTTAS EVVVPTPLPH QCFDSSSDLR 780 HHHHHHHRVL PDDTCRRGSI VAADYGTTSG NADSVGSTLI TFGTTAGDVS LTLGLRHAGN 840 MPEKTSSFSV RDYGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 583 | 641 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 583 | 641 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 583 | 641 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 583 | 641 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 583 | 640 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 583 | 640 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890195.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024932330.1 | 0.0 | BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 1e-165 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A2I4FF00 | 0.0 | A0A2I4FF00_JUGRE; BEL1-like homeodomain protein 2 | ||||
STRING | EOX91228 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3524 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-153 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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