PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015890124.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | B3 | ||||||||
Protein Properties | Length: 468aa MW: 52139.4 Da PI: 7.1073 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.8e-20 | 128 | 217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k l++s+v + ++ lp f+++h + +++t+tledesg++++ k+i k++ l++GW++F+ a++L egD++vF+l++ ++f +v XP_015890124.1 128 FVKSLVRSHVASCFWMGLPGLFCKTHLPD--KDVTITLEDESGKQYQSKYIAYKTG----LSAGWRQFAAAHNLLEGDVLVFQLVEPTKF--KVY 214 89************************533..689****************666665....9**********************9876666..888 PP EE- CS B3 96 vfr 98 ++r XP_015890124.1 215 IIR 217 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-24 | 122 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 122 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.57E-27 | 126 | 217 | No hit | No description |
PROSITE profile | PS50863 | 13.507 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-17 | 128 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-23 | 128 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MVRGVVVEGR EKEDQLTASY YEEGDVTLAQ LSRSPKTKPK PTPPSSSSPS VKQKKPNVED 60 EKFSKMKKVS ARAKINLAAS GHSGKVLSSK QNMATINGSC TLSGEAKSSA VIRAQEVRSN 120 LGPEYPSFVK SLVRSHVASC FWMGLPGLFC KTHLPDKDVT ITLEDESGKQ YQSKYIAYKT 180 GLSAGWRQFA AAHNLLEGDV LVFQLVEPTK FKVYIIRPND LTEVDGALGL LNLDAHICQD 240 DEVVEKKKKK TGQSTWAPKA AEQSENDSEE VGSEVYEGSK LSRPAVQFKD VKSFENFSIL 300 VDGFLIDSEL PEDIRQMYYK LCCSQNAFLH EHLIKGINYK LIVGIIYETV NIANAIKSCK 360 LATSWNDFAA WEKSLKAFEL LGMNVGFLRA RLCRLANLAC ESEDSVVVKR FIDAETERSQ 420 AKSGIRNIER KLEELKEACD TFGVAIENLR SQAEIDELKF QEQVNVPW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015890124.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015890124.1 | 0.0 | B3 domain-containing protein Os01g0234100-like isoform X5 | ||||
TrEMBL | A0A2P5FYB6 | 0.0 | A0A2P5FYB6_TREOI; B3 DNA binding domain containing protein | ||||
STRING | XP_010094372.1 | 0.0 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 7e-38 | B3 family protein |