PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890121.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 490aa    MW: 54641.2 Da    PI: 7.1081
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890121.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.47.4e-20128217198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v +  ++ lp  f+++h  +  +++t+tledesg++++ k+i  k++    l++GW++F+ a++L egD++vF+l++ ++f  +v 
  XP_015890121.1 128 FVKSLVRSHVASCFWMGLPGLFCKTHLPD--KDVTITLEDESGKQYQSKYIAYKTG----LSAGWRQFAAAHNLLEGDVLVFQLVEPTKF--KVY 214
                     89************************533..689****************666665....9**********************9876666..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_015890121.1 215 IIR 217
                     887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-24122219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-21122219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.32E-27126217No hitNo description
PROSITE profilePS5086313.507128219IPR003340B3 DNA binding domain
PfamPF023622.8E-17128217IPR003340B3 DNA binding domain
SMARTSM010193.2E-23128219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MVRGVVVEGR EKEDQLTASY YEEGDVTLAQ LSRSPKTKPK PTPPSSSSPS VKQKKPNVED  60
EKFSKMKKVS ARAKINLAAS GHSGKVLSSK QNMATINGSC TLSGEAKSSA VIRAQEVRSN  120
LGPEYPSFVK SLVRSHVASC FWMGLPGLFC KTHLPDKDVT ITLEDESGKQ YQSKYIAYKT  180
GLSAGWRQFA AAHNLLEGDV LVFQLVEPTK FKVYIIRPND LTEVDGALGL LNLDAHICQD  240
DEDKDDAEMD ANTNRKRMKS LPLAVVEKKK KKTGQSTWAP KAAEQSENDS EEVGSEVYEG  300
SKLSRPAVQF KDVKSFENFS ILVDGFLIDS ELPEDIRQMY YKLCCSQNAF LHEHLIKGIN  360
YKLIVGIIYE TVNIANAIKS CKLATSWNDF AAWEKSLKAF ELLGMNVGFL RARLCRLANL  420
ACESEDSVVV KRFIDAETER SQAKSGIRNI ERKLEELKEA CDTFGVAIEN LRSQAEIDEL  480
KFQEQVNVPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254271RKRMKSLPLAVVEKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890121.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890121.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2P5FYB60.0A0A2P5FYB6_TREOI; B3 DNA binding domain containing protein
STRINGXP_010094372.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-38B3 family protein