PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890081.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 766aa    MW: 88098.1 Da    PI: 10.2165
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.2e-169100199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv +++     + + +pkkf+++h +  ++   ++l+ +sg +W+++   + ++g+++l+kGW eF++   L++g f+vF+++g+s+f  +v 
  XP_015890081.1   9 FFKVVLNETLRD-KKIHIPKKFMRKHRETLTS--PVILQLPSGVEWNIEP--EICGGEVWLQKGWPEFANYYSLEQGHFLVFRYEGNSRF--HVI 96 
                     677776655555.55***********755444..6***************..**********************************9999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f++
  XP_015890081.1  97 IFDA 100
                     9986 PP
2B358.99.2e-19192295198
                     EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
              B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr.....yvltkGWkeFvkangLkegDfvvFkld.gr 87 
                     f  v+ +s+v+ks ++l++p+kfa ++ +kke+    tl++++ r+W+v+++  + ks+       ++++GW++F+++n+Lk+ D+++F+l+ g 
  XP_015890081.1 192 FSVVMRSSYVFKShHNLTIPRKFAGRYINKKEG--HFTLRSSDDRTWSVQYKTrS-KSNCaqdttEIISSGWNSFARDNNLKVCDVCIFELIaGG 283
                     5567788999988799***********777767..59999***********6642.2222345666788*********************98533 PP

                     .SEE..EEEEE- CS
              B3  88 .sefelvvkvfr 98 
                      +  ++ v+++r
  XP_015890081.1 284 nDISHFQVSIIR 295
                     355555666665 PP
3B355.31.2e-17313404388
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-.....TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvlt.....kGWkeFvkangLkegDfvvFkldgrs 88 
                      v+ +s+v k  ++l++pkkfae++ +kke+    tl+ ++gr+W+v+++ r ks+   y +t     +GW++F+++n+L++ D+++F+l+++ 
  XP_015890081.1 313 VVMRSSYVYKAhHNLTIPKKFAERYISKKEGY--FTLRISDGRTWSVQYKTRSKSNNigYEITeissgGGWNSFARQNNLEVCDICIFELISSG 404
                     44555666554599***********8787775..6666777********7777777667444477777*********************98542 PP
4B354.42.2e-17465557196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f  v+ ps+   +g l +p+kf+++h +k  ++ +  l+ ++gr W+v+++  k+s r++    W+ F+++n+L++gD+++F+l+ +++  l+++
  XP_015890081.1 465 FSIVMQPSYIDGRGKLNIPNKFVARHINK--REAEFNLRVSNGRCWSVRYRAVKRS-RTINYCDWRAFAHDNKLEVGDICIFELITSENDILHFQ 556
                     5567889999999*************545..44589**************765555.4556678*******************997655555555 PP

                     E CS
              B3  96 v 96 
                     v
  XP_015890081.1 557 V 557
                     4 PP
5B343.55.7e-14677760596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++++ +g++ +p +f + + +k +++++l++     r+Wevkl    ++gr +l+kGW +F+++n ++ gD + F+ +  ++  +v++v
  XP_015890081.1 677 CMRAYHFDHGIVAIPASFERLYLEKRTQNMKLMMG---KRRWEVKL---VSGGRLFLSKGWTSFARDNCVRIGDLCRFEKV--EDNPPVFHV 760
                     5689999***********99997676777777755...4*******...88899*************************44..455555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-242101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-232100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.628101IPR003340B3 DNA binding domain
CDDcd100173.10E-17899No hitNo description
SMARTSM010193.8E-179101IPR003340B3 DNA binding domain
PfamPF023622.6E-139100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-23185296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-21185296IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-21190295No hitNo description
SMARTSM010197.9E-13192292IPR003340B3 DNA binding domain
PfamPF023627.9E-17192295IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493193297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.4E-22304416IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-21304417IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-20309416No hitNo description
SMARTSM010193.3E-9311413IPR003340B3 DNA binding domain
PfamPF023627.2E-16311403IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703312418IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-23456563IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-21458560IPR015300DNA-binding pseudobarrel domain
CDDcd100179.26E-19463561No hitNo description
SMARTSM010192.0E-14465563IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211465563IPR003340B3 DNA binding domain
PfamPF023622.9E-15465555IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-19668764IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-17668764IPR015300DNA-binding pseudobarrel domain
CDDcd100179.55E-13672764No hitNo description
PROSITE profilePS5086312.21673766IPR003340B3 DNA binding domain
SMARTSM010191.6E-6674766IPR003340B3 DNA binding domain
PfamPF023621.9E-11677760IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MFSSTTTHFF KVVLNETLRD KKIHIPKKFM RKHRETLTSP VILQLPSGVE WNIEPEICGG  60
EVWLQKGWPE FANYYSLEQG HFLVFRYEGN SRFHVIIFDA TATEIDYPIN PAHFSKSHID  120
KDKLKKPKEE VIENDVSEAG EKFSVQCSRP HKRMKTSSIS SKVVGKKKIK HCLSSIEKAR  180
ALHGFKSENP FFSVVMRSSY VFKSHHNLTI PRKFAGRYIN KKEGHFTLRS SDDRTWSVQY  240
KTRSKSNCAQ DTTEIISSGW NSFARDNNLK VCDVCIFELI AGGNDISHFQ VSIIRHHDHI  300
SGGFKSENPF FSVVMRSSYV YKAHHNLTIP KKFAERYISK KEGYFTLRIS DGRTWSVQYK  360
TRSKSNNIGY EITEISSGGG WNSFARQNNL EVCDICIFEL ISSGNDISHF QVSIVRHHDH  420
ISLGKLQAKS NATDVIRRKQ KILGSERDRA HKRAVSSFRS ENPFFSIVMQ PSYIDGRGKL  480
NIPNKFVARH INKREAEFNL RVSNGRCWSV RYRAVKRSRT INYCDWRAFA HDNKLEVGDI  540
CIFELITSEN DILHFQVSFV RHSGQLSLDG NRDASNPVKE EICTIQIGNQ IAKKECQNPK  600
KRNRNQVQPT DGNQIASNPV KEETCTNPTV NQFAKKENQN PKKRNRNQDQ PTAKSNGGKP  660
PSSEVDFGSK NPSFDVCMRA YHFDHGIVAI PASFERLYLE KRTQNMKLMM GKRRWEVKLV  720
SGGRLFLSKG WTSFARDNCV RIGDLCRFEK VEDNPPVFHV SITRAF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890081.20.0B3 domain-containing protein Os03g0620500-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-27B3 family protein