PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890064.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 441aa    MW: 50532.2 Da    PI: 10.2412
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.5e-11431063399
                     -SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  33 sktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     s++l l  + g  +W+++l  +k++g++ l kGW eF+k   +++g f+vF+++g+s f  +v +f++
  XP_015890064.1  43 SIKLLLPRKIGsLKWQIEL--EKCGGEVRLVKGWLEFAKHYSIEQGHFLVFRYEGNSHF--HVIIFDN 106
                     44455544333489*****..**********************************9999..9999986 PP
2B359.75e-19214312395
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr..se 89 
                      v+ ps+v +  +++++p+kfae+++ k+e+  +ltl+ ++gr W ++++     ++ks+r  +  +GWk F+ +n+L++gD+++F+l+ +  + 
  XP_015890064.1 214 VVMQPSYVISGlNNVIIPRKFAERYMTKNEG--ELTLRISDGRCWPIRYKTkislNNKSERtEIVNRGWKAFAGDNNLEVGDVCIFELIASgnKI 306
                     57889999887799***********877555..8***************778899666666578899********************98431244 PP

                     E..EEE CS
              B3  90 felvvk 95 
                      ++ v+
  XP_015890064.1 307 SHFQVS 312
                     444555 PP
3B353.54.4e-17348440399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + l+p ++++ + l++p  fa+++ +kk++ ++l l+    ++W vkl   + + +y+l++GW  F+k+n+L++gD++ F+ ++r+   l v++ 
  XP_015890064.1 348 QLLLPISSFRCSHLSIPCGFARTMFKKKRR-QELELKV-GKKRWYVKL--INDGTKYFLSGGWIVFAKDNRLRAGDVCCFQIIQRKPVVLQVSIT 438
                     5677899999999********999666544.5888776.779******..899999**************************9998888888887 PP

                     -S CS
              B3  98 rk 99 
                     r+
  XP_015890064.1 439 RT 440
                     75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0517107IPR003340B3 DNA binding domain
PfamPF023629.4E-843106IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-1450106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-1353107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.68756107IPR003340B3 DNA binding domain
CDDcd100172.67E-956105No hitNo description
Gene3DG3DSA:2.40.330.103.3E-23205315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22205315IPR015300DNA-binding pseudobarrel domain
CDDcd100175.03E-18210315No hitNo description
SMARTSM010199.6E-12212312IPR003340B3 DNA binding domain
PROSITE profilePS5086314.254213317IPR003340B3 DNA binding domain
PfamPF023624.4E-17214303IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-19341439IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-16342439IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.324346441IPR003340B3 DNA binding domain
SMARTSM010192.8E-10346441IPR003340B3 DNA binding domain
CDDcd100171.56E-14347439No hitNo description
PfamPF023622.6E-15348440IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MALSRRESYL TQKETSGFGV LSGNNGGKCT IYETIGVISY KKSIKLLLPR KIGSLKWQIE  60
LEKCGGEVRL VKGWLEFAKH YSIEQGHFLV FRYEGNSHFH VIIFDNTAVE IEYPIDPTQF  120
DKKSNVGKDK VIEPKREEME YDDCLFPKTG DESSFQYSRP QKRMRTIDKT YSTHLSKPKS  180
NVIGRKQRLS NSERDKAIGR AVSGFKSENP FFPVVMQPSY VISGLNNVII PRKFAERYMT  240
KNEGELTLRI SDGRCWPIRY KTKISLNNKS ERTEIVNRGW KAFAGDNNLE VGDVCIFELI  300
ASGNKISHFQ VSIVRHADHI TPGKFEEKNS GRPSIFSEGS ASKYPSFQLL LPISSFRCSH  360
LSIPCGFART MFKKKRRQEL ELKVGKKRWY VKLINDGTKY FLSGGWIVFA KDNRLRAGDV  420
CCFQIIQRKP VVLQVSITRT N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1418431222143B3 domain-containing transcription factor VRN1
4i1k_B2e-1418431222143B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372376KKKRR
2375387RRQELELKVGKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015890064.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932660.10.0B3 domain-containing transcription factor VRN1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-26B3 family protein