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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | DBB | ||||||||
Protein Properties | Length: 233aa MW: 25922.4 Da PI: 7.3964 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1e-07 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ ++ fC ++ lC++C ++ H XP_015889651.1 3 TICDACESAAAIVFCAADEAALCRSCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 26.5 | 1.4e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H XP_015889651.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.296 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 8.9E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.5E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.65E-6 | 3 | 45 | No hit | No description |
PROSITE profile | PS50119 | 8.83 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-6 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.02E-6 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRTICDACES AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLVLRQR VEFPGDKPGN LEDPAAQLMD 120 RGESRRGQTQ QPRMTSGEKQ QNHKVSPVPI SETDADGHAK RDNKMIDLNI QPYRMHGQAS 180 NNQFGNTFKS QVNAKVLCSY YILQMDPSDK MHSLLAANYG HDRQNFISST PCI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889651.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889651.1 | 1e-176 | B-box zinc finger protein 18-like isoform X1 | ||||
Swissprot | C0SVM5 | 8e-74 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1Q3C734 | 1e-109 | A0A1Q3C734_CEPFO; Zf-B_box domain-containing protein | ||||
STRING | XP_008241795.1 | 1e-109 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 3e-76 | DBB family protein |