PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889554.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 291aa    MW: 32742.1 Da    PI: 5.3534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-10121158340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                       W++ E+el++ +  ++G+g+W++Iar++  ++t+ q+
   XP_015889554.1 121 LWSQREHELFLMGLVRYGKGHWTKIARHFVGTKTPQQV 158
                      6****************************999**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.577117170IPR017884SANT domain
SMARTSM007177.5E-9118168IPR001005SANT/Myb domain
PfamPF002492.0E-7121158IPR001005SANT/Myb domain
SuperFamilySSF466893.29E-10122169IPR009057Homeodomain-like
CDDcd001673.67E-8122162No hitNo description
Gene3DG3DSA:1.10.10.601.8E-8122169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEVIDLTDSP PLTPLSHEKT SKPTSDMEKL LQLKLYGMSN LAEFGDLNLP SEPAEPREDD  60
HPMLPQTLTG QQTQNQCESD MMLLDNNMQA VQPDVDQSAL LNNNKRKYTF FYTRGRLSKD  120
LWSQREHELF LMGLVRYGKG HWTKIARHFV GTKTPQQVSA YALAFYKRLP ITYLYAFKRK  180
RTTVDYIQNG VPTAASVTQT TLIRTPNFPY IPPEPAQNPN YQPPQTLMLF PVEAPLFPLP  240
DHQQNGRGDT SSSSSSSAAV LADAYSAMEG CTLGLTSMDD SCELDLDLRL C
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889554.10.0transcription factor KUA1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14942612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.15e-14MYB family protein