PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889527.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family DBB
Protein Properties Length: 210aa    MW: 23081.9 Da    PI: 4.5878
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68e-06443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                     C+ +e+ e++  C  ++  lC +C ++ H g       H+
  XP_015889527.1  4 QCDVCEKAEAEVLCCADEAVLCVECDEKVH-GanmlsqkHE 43
                    7*****************************.5467777776 PP
2zf-B_box26.81.1e-0866109339
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 
                      + C++++ek+   fC + + llC+ C +++H +       H++
  XP_015889527.1  66 LPLCDKCQEKNGYVFCLEERALLCRHCDMSKHMSgspytssHQR 109
                     689*****************************555677777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.641147IPR000315B-box-type zinc finger
SMARTSM003365.0E-7147IPR000315B-box-type zinc finger
CDDcd000216.50E-7347No hitNo description
PROSITE profilePS501199.74164112IPR000315B-box-type zinc finger
SMARTSM003362.0E-764112IPR000315B-box-type zinc finger
PfamPF006436.4E-665108IPR000315B-box-type zinc finger
CDDcd000213.47E-667112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKVQCDVCEK AEAEVLCCAD EAVLCVECDE KVHGANMLSQ KHERLCLLKC PLPSSSFSAV  60
SSSSPLPLCD KCQEKNGYVF CLEERALLCR HCDMSKHMSG SPYTSSHQRL LIADIKVSLQ  120
PSTNNSDNIG YNSTKYPSSL SMSITMNKFP ADNESRTMDV EAAYAENTGT FLGGSGFPTE  180
CNWTLDEILD TNSFNYYEFS DAGSSRIGSQ
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889527.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889527.11e-156B-box zinc finger protein 23
SwissprotQ9SYM27e-37BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2I4FRB21e-72A0A2I4FRB2_JUGRE; B-box zinc finger protein 23
STRINGVIT_18s0089g01280.t017e-63(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1837746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.18e-36light-regulated zinc finger protein 1