PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015889359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29525.1 Da PI: 6.1544 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.1 | 5.3e-15 | 42 | 81 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_015889359.1 42 SIEEEDLILKLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNS 81 669***************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.24 | 1 | 32 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.18E-19 | 18 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-10 | 18 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.335 | 33 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-12 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 42 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.96E-11 | 44 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-20 | 45 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MERPSTKSRF VLFATCLKRC GKSCRLRWLN YLRPDIKIGN ISIEEEDLIL KLHKLLGNRW 60 SLIAGRLPGR TDNEIKNYWN SKLSKRVLPA ENKVQEDSTH KLQQTVGIIN NLETGNNTTT 120 AAASSHQVIR TKAFRCTKVA LPSRLLGDDH DQQYQMADTN STCASECPSC NSDMPCQGDQ 180 NHQNLSDFLM DFDISELLNL SDFCQPNEIA ECHNVVDAPI PARNNEANFS WCGNLGDTTD 240 AFQPHQDLDF YALSNSFLNR E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 8 | 87 | 28 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015889359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015889359.1 | 0.0 | transcription factor TT2 isoform X2 | ||||
TrEMBL | M5VTE1 | 2e-55 | M5VTE1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04331 | 4e-56 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-41 | MYB family protein |