PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889358.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 267aa    MW: 30286 Da    PI: 6.2989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889358.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48e-144287546
                     -HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                     + eE++l+++++k+lG++      W++Ia +++ gRt++++k++w++
   XP_015889358.1 42 SIEEEDLILKLHKLLGNRylyahIWSLIAGRLP-GRTDNEIKNYWNS 87
                     669******************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.24132IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-101844IPR009057Homeodomain-like
SuperFamilySSF466891.58E-171894IPR009057Homeodomain-like
PROSITE profilePS5129419.2023393IPR017930Myb domain
SMARTSM007179.1E-83791IPR001005SANT/Myb domain
PfamPF002494.2E-114287IPR001005SANT/Myb domain
CDDcd001673.29E-94489No hitNo description
Gene3DG3DSA:1.10.10.601.7E-174589IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MERPSTKSRF VLFATCLKRC GKSCRLRWLN YLRPDIKIGN ISIEEEDLIL KLHKLLGNRY  60
LYAHIWSLIA GRLPGRTDNE IKNYWNSKLS KRVLPAENKV QEDSTHKLQQ TVGIINNLET  120
GNNTTTAAAS SHQVIRTKAF RCTKVALPSR LLGDDHDQQY QMADTNSTCA SECPSCNSDM  180
PCQGDQNHQN LSDFLMDFDI SELLNLSDFC QPNEIAECHN VVDAPIPARN NEANFSWCGN  240
LGDTTDAFQP HQDLDFYALS NSFLNRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1889328108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889359.10.0transcription factor TT2 isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-39MYB family protein