PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889263.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 277aa    MW: 30587.5 Da    PI: 8.789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.11.9e-13555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l+ +v+++G+g Wk I r         +R+  ++k++w++
   XP_015889263.1  5 KQKWTSEEEEALKAGVAKHGTGKWKDIQRDPEfnkflSTRSNIDLKDKWRN 55
                     79***********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.494161IPR017930Myb domain
SuperFamilySSF466891.72E-16258IPR009057Homeodomain-like
SMARTSM007172.3E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-15556IPR009057Homeodomain-like
PfamPF002491.5E-9555IPR001005SANT/Myb domain
CDDcd116601.94E-22656No hitNo description
PROSITE profilePS5150418.537113185IPR005818Linker histone H1/H5, domain H15
SMARTSM005262.6E-11115180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.2E-11116192IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.7E-11120193IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005387.5E-8121178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALKAGV AKHGTGKWKD IQRDPEFNKF LSTRSNIDLK DKWRNMSVAS  60
GQGPREKSRQ PKAKANPDAP SAQLSTAQTS TATPVPRDAL SGATVDDSSK GLSDAKTAAM  120
YNAMIFEVLS TSKDQNGLDT STIASFIEQR HEVPQNFRRL LSSRLRRLVA QDKLEKVQNC  180
FKIKSETSSG TKTPTMKQED NQFGKVQNVS YVKVTDPIED AAVSAAYKIA EAENKSFVAA  240
EAIKEVERMS KMAEDTESML LLAKEIFEKC SQGEVLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889263.10.0telomere repeat-binding factor 4-like
TrEMBLA0A2I4GQM61e-126A0A2I4GQM6_JUGRE; telomere repeat-binding factor 4-like
STRINGXP_010242277.11e-124(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-71MYB_related family protein