PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015889182.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 344aa    MW: 38864.9 Da    PI: 8.0592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015889182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86e-09288342147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqky 47 
                      r++WT eE+e l+++v+++ +      W++I +        +Rt+ ++k++w++ 
   XP_015889182.1 288 RLNWTNEEEEMLKKGVARFSTAnkniPWRKILEFGCrvfnGTRTPVDLKDKWRNI 342
                      89******************99*********9877799999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.81E-5765IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-4761IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154890.001111156No hitNo description
Gene3DG3DSA:1.10.10.604.3E-10283342IPR009057Homeodomain-like
PROSITE profilePS5129411.242283344IPR017930Myb domain
SuperFamilySSF466897.18E-10286342IPR009057Homeodomain-like
SMARTSM007179.6E-4287344IPR001005SANT/Myb domain
PfamPF002491.5E-6288342IPR001005SANT/Myb domain
CDDcd116602.96E-12291343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MHLDSLDREE CRRCKGKHDG RVLICSEIGC PIAIHEKCMC CKPMFDDFGR FYCPYCSYKR  60
ALRWTLAFGR NAKAAKKALL DFLGGNKYYQ EDGEGEKNEH GAKHLDNCQV EIEKTVVDTG  120
IRVSEKNEQN IDSHVEIGTT VDGLVIGLNG VDTDIRVSEK NELNVDSHLE KGTTADGLVI  180
GLNEAVDDGI RVLEGNNGRR EDEELIQGLD EPANIDRPIL EVRTRHIKRR AQRTVHVENV  240
DSSGRLSPPS RKSSNRPTTI AGATPSKTSL ESGKQFTNLN FPNAKRKRLN WTNEEEEMLK  300
KGVARFSTAN KNIPWRKILE FGCRVFNGTR TPVDLKDKWR NIKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015889182.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889182.10.0uncharacterized protein LOC107424012
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-07MYB_related family protein