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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | MYB_related | ||||||||
Protein Properties | Length: 775aa MW: 85253.1 Da PI: 6.1534 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.7e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_015888949.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.36E-17 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.091 | 19 | 73 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-8 | 21 | 70 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-17 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 23 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 775 aa Download sequence Send to blast |
MDTYSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFS KLEKEALVKG VPVGQTLDID IPPPRPKRKP SNPYPRKTSA AIPTSHVGVK 120 DVKLLPSESS SHCKQVLDLE KEPIPERPGG EEDPTNEKEN PTNEKENQDE NCSEVFTMLQ 180 EAHYSSISSA NRNSMPSPVA LTNACTFREF VPSSKQANQD ESNGSYVTIE HQGNQNLEKV 240 NAKQRAVQDN ATNRRSKFDN SNSPLEELVQ NEKRNDLNCE MPTEELQTTQ NYPRHVPVHV 300 LDGSLGNCTQ TPSADISFQD PIFHPIGEVP GHPTVFPNPA ASATTEHQSN VSRSSVHQSF 360 PPFHPTFTPI RHDQDEYRSF LQMSSTFSSL IVSTLLQNPA AHAAASFAAT FWPYANMETS 420 ADSPACPHGG FPSRQMNSTP SMAAITAATV AAATAWWAAH GLLPLCAPLH TGFACAPAST 480 SVPSMDTGQA LAAKTERGEN SPNPPLQDQL DVEHSEALQS QHSASKSPTQ SSTESEESGA 540 AKPDTCLKAA DDEKATAEPD LHDSNPVKSR KQVDRSSCGS NTASSSEVET DALEKHDKGK 600 EELKESDKNH PATESTNRRI RSTSTLIDSW KEVSEEGRLA FQALFSREVL PQSFSPPRDI 660 LNKKENQNNS AEGDKQNVEE KGGDTLLLDL NRRILLSRSI QQEVEKNASS RSDTNGDEGL 720 LTIGLGHGKL KTRRTGFKPY KRCSVEAKEN RVGSAGCQGE EKGPKRLRLE GEAST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888949.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR813316 | 1e-133 | KR813316.1 Betula platyphylla LHY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888949.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | M5XF42 | 0.0 | M5XF42_PRUPE; Uncharacterized protein | ||||
STRING | EMJ20128 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-135 | MYB_related family protein |