PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888930.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 456aa    MW: 51703.9 Da    PI: 6.9376
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888930.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.35.4e-3297201199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_015888930.1  97 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvGEsGK 191
                     89***************************966778999*************************************************66577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_015888930.1 192 NRLYIDWRRR 201
                     8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-4189202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.72E-3094200IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2695191No hitNo description
PROSITE profilePS5086314.9697202IPR003340B3 DNA binding domain
PfamPF023622.0E-2997201IPR003340B3 DNA binding domain
SMARTSM010192.0E-2397202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MSKEYAQEFR REYSDKEEEE DQEEEDEQQL QNQWLIRRFE SPSEDHHHES AAAAAASETT  60
NFNSKLHLID LSLKSSDEEA SDGSRGGWSG IEREHMFDKV VTPSDVGKLN RLVIPKQHAE  120
KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDVV  180
SFQRGVGESG KNRLYIDWRR RPYAPPNPAT SLLAPLQLPS DHLHHHHQQQ QHQHFPQSVR  240
WAGRLYSMPQ PQPVSMPLRH HEHFQYQLSS YNNVHPYNCH HHQQYYSSNY HHGGSTTSSQ  300
YDYYNFLRSS SGGGGGGSSL LHSQLHQAEE VQRVGGGGGG GNIVPMVIES VPVGRHGTNT  360
GTNTNTQPSH ESKRLRLFGV NMEYKEEPDC DILSSSRTAV PDVAMASQSL LHHHLSSSSL  420
EVKLPNHSQP STIPIPIPAE FLKKGKSTSL SFALDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-66922023114B3 domain-containing transcription factor NGA1
5os9_B2e-66922023114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888930.10.0B3 domain-containing protein Os03g0120900-like isoform X2
TrEMBLA0A061DTX91e-104A0A061DTX9_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX955411e-105(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-68B3 family protein