PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888929.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 496aa    MW: 56103.6 Da    PI: 7.1884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.2e-32137241199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_015888929.1 137 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvGEsGK 231
                     89***************************966778999*************************************************66577788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_015888929.1 232 NRLYIDWRRR 241
                     8999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-41129242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-30134240IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-26135231No hitNo description
SMARTSM010192.0E-23137242IPR003340B3 DNA binding domain
PfamPF023622.3E-29137241IPR003340B3 DNA binding domain
PROSITE profilePS5086314.96137242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSKEYAQEFR REYSDKEEEE DQEEEDEVRV NSTSINTTAT TTQLPSSSSG YNSRHQNHHH  60
HHVVVPQQQL QNQWLIRRFE SPSEDHHHES AAAAAASETT NFNSKLHLID LSLKSSDEEA  120
SDGSRGGWSG IEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSTN EKGLLLNFED  180
RNGKPWRFRY SYWNSSQSYV MTKGWSRFVK EKKLDAGDVV SFQRGVGESG KNRLYIDWRR  240
RPYAPPNPAT SLLAPLQLPS DHLHHHHQQQ QHQHFPQSVR WAGRLYSMPQ PQPVSMPLRH  300
HEHFQYQLSS YNNVHPYNCH HHQQYYSSNY HHGGSTTSSQ YDYYNFLRSS SGGGGGGSSL  360
LHSQLHQAEE VQRVGGGGGG GNIVPMVIES VPVGRHGTNT GTNTNTQPSH ESKRLRLFGV  420
NMEYKEEPDC DILSSSRTAV PDVAMASQSL LHHHLSSSSL EVKLPNHSQP STIPIPIPAE  480
FLKKGKSTSL SFALDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-661322423114B3 domain-containing transcription factor NGA1
5os9_B2e-661322423114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888929.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888929.10.0B3 domain-containing protein Os03g0120900-like isoform X1
TrEMBLA0A061DTX91e-104A0A061DTX9_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOX955411e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-68B3 family protein