PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888724.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 612aa    MW: 67862.1 Da    PI: 7.0026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13443489455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_015888724.1 443 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 489
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-5752240IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-18442502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-14442493No hitNo description
PfamPF000101.8E-10443489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18443503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-16445494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MKIEVGLGGG VWNDEEKAMV ATVLGTRAFD YLISNSVSNE NLFMAIGSDE NLQNKLSDLV  60
ERPNASNFSW NYAIFWQISR SKSGDYVLGW GDGSCREPRE GEESEGARIL NLRLEDETQQ  120
KMRKRVLQKL HKLFGGSDED NYALGLDRVT DTEMFFLASM YFSFPRGEGG PGKCYASGKH  180
VWLFNALKST SDYCVRSFLA KSAGIQTIVL VPTDVGVVEL GSVRSVGESL ELLQSIRSLF  240
STQSSHMRVK PMAALPVMGE KRDENAHLAN SAIVERGEVV PKIFGQDLNS GNTGRPHYRE  300
KLAVRKMEDR WDSYSNGNRI AFSSPRNGIH ASSWPYGHGV KQASPNSIFV SQSPGNNIQE  360
LVNGVGEEFR LNHYQPQKQV PMQIDFSGAT SRPSVINRPM SAESEHSDVE VSCKEERPGT  420
AADERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS KMDKASLLGD  480
AIAYINELQA KLKVMEADRD NLGSSSRDAS SLEATANPES QNRAPDVDIQ AAHDEVIVRV  540
SCPLESHPAS RIIQAFKEAQ ISVVESKLSA ANDTVFHTFV IKSQGSEQLT KEKLIAAFSR  600
ESNSLQMTTS VG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29437499264Transcription factor MYC2
5gnj_B5e-29437499264Transcription factor MYC2
5gnj_E5e-29437499264Transcription factor MYC2
5gnj_F5e-29437499264Transcription factor MYC2
5gnj_G5e-29437499264Transcription factor MYC2
5gnj_I5e-29437499264Transcription factor MYC2
5gnj_M5e-29437499264Transcription factor MYC2
5gnj_N5e-29437499264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424432RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888724.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888724.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2P5FHN30.0A0A2P5FHN3_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ214030.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]