PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888719.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 196aa MW: 21979.9 Da PI: 6.2488

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.2	2.1e-36	21	118	3	100
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aaCk+lrrkC ++C l+pyfp+e+ +kfa vh++FGasnv+k+++ ++e +red++++lvyeA ar+rdPvyG+ g i++lq+ +e+l ++l+++ XP_015888719.1 21 AACKMLRRKCDSNCLLSPYFPSEDIEKFAGVHRVFGASNVVKMIQMVEEANREDTVKALVYEATARLRDPVYGSSGAIFHLQKMVEELTSQLETV 115 8*******************************************************************************************998 PP DUF260 98 kee 100 ++ XP_015888719.1 116 TAQ 118 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.055	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-36	21	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
METTQVPMPG GGGRGVHIPY AACKMLRRKC DSNCLLSPYF PSEDIEKFAG VHRVFGASNV 60 VKMIQMVEEA NREDTVKALV YEATARLRDP VYGSSGAIFH LQKMVEELTS QLETVTAQAS 120 ELQANIDQLL SILMNVGYLD IFSTMHHHPS TFDDDCTHHL LQHHHHHQHN IIPDTVASCD 180 IIPDDHHLIN VPKDHN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-32	15	115	7	107	LOB family transfactor Ramosa2.1
5ly0_B	4e-32	15	115	7	107	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888719.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888719.1	1e-146	LOB domain-containing protein 25-like
Swissprot	Q9LQR0	1e-38	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A314Z7K2	4e-67	A0A314Z7K2_PRUYE; LOB domain-containing protein 1
STRING	EMJ20913	2e-66	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14068	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-41	LOB domain-containing protein 1