PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015888651.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 629aa    MW: 71288.2 Da    PI: 5.6105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015888651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48.3e-064634961755
                     HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     N++f  Lr+++P+      +  +Ka+iL  +++Y+k+L+
  XP_015888651.1 463 NERFLLLRTMVPSI-----TEIDKASILNDTIKYLKELE 496
                     99***********7.....69***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-5215196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.42446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-4455501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-6461500No hitNo description
SuperFamilySSF474592.75E-9463520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-8463507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MANGSHNHEG IPENLRKQLA VAVRSIQWSY AIFWSLSKTR QGVLEWYDGY YNGDIKTRKT  60
VQAMELKADK IGLQRSVQLR ELYKSLLEDQ TDQQAKRHSA ALSPDDLSDA EWYYLVCMSF  120
VFEPGQGLPG RALANGQTIW LSNAQYADSK VFSRSLLAKS ASIQTVVCFP HLGGVIEIGV  180
TDLVSEDLNL LQRIKASLLD FSKPVCSDIS SPAPHRADDD SDPICAKVDQ EIPDTLALEN  240
LCSPSEDVKF DQHGHPEEFS IDSPDECSNG CEHNHQTEDS YMLEGTNGGG ASQVQSWHFM  300
DDDFYTGVQD SMNSSDCISE AFVNQDKAFS SPKHENLEQM HLKELQNSNH TKLNSLDLGT  360
DEDLHYKRTL ATILGGPSQL IENPCFRSCD FGFSFTKWKR GGQVNNYRPR IQQSMLKKIL  420
FSVPFMYGRC SLKEQKQGVG KAWPSKVQND CNGHVKYDKL KENERFLLLR TMVPSITEID  480
KASILNDTIK YLKELEARVE ELESYMGSVN YESRARKKYL DIVEQTSDNY KNGKTTWITK  540
RKACDIDETD PDLSRVIHKE GPPDIKVSLK DQEVLIEMRC PYREYILLDI MDAINNLHLD  600
AHSVRSNNHD GVLTLTLKSK VCNSIFVKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-141319446227Transcription factor MYC3
4ywc_A2e-141319446227Transcription factor MYC3
4ywc_B2e-141319446227Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015888651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888651.10.0transcription factor EGL1-like isoform X2
RefseqXP_024931568.10.0transcription factor EGL1-like isoform X1
TrEMBLA0A2I4DLE30.0A0A2I4DLE3_JUGRE; transcription factor EGL1-like
STRINGEMJ214080.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-162bHLH family protein