PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015888349.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

HSF

Protein Properties

Length: 500aa MW: 55779.4 Da PI: 5.9281

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888349.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.5	5.8e-35	23	114	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw +++nsfvv + fa+++LpkyFkh+nf+SFvRQLn+YgFkkv+ ++ weF+++ F +g+k+ll++ XP_015888349.1 23 FLSKTYDMVDDPSTDSIVSWGSRNNSFVVRNVALFASDLLPKYFKHNNFSSFVRQLNTYGFKKVDPDQ---------WEFANEGFLRGQKHLLRS 108 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i r+k XP_015888349.1 109 ISRRKP 114 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.8E-37	15	106	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	6.26E-33	18	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-57	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.8E-30	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-19	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEGGARGAAS SITNSGSSSL PPFLSKTYDM VDDPSTDSIV SWGSRNNSFV VRNVALFASD 60 LLPKYFKHNN FSSFVRQLNT YGFKKVDPDQ WEFANEGFLR GQKHLLRSIS RRKPAHMHSY 120 QQPEVQSSTV GACIEVGKFG LDEEVERLKR DKNVLMQELV RLRQQQQATD HQLQNVGQRV 180 QVMEQRQQQM MSFLAKAMHS PGFLSHLVQQ QNEGKRRITV GNKKRRLPRQ GKNPTAEHGI 240 NSPDGRMVKY QPSMNEAAKA MLQQILKMNT SPRLQPGVCY PDAFMFNDVP SSKLDSGRNF 300 RRISEVAHAE VPPSAQSFML EETGFSVTCP SEAISEIQSS PLVVANDAKA AQFSETKRQS 360 PSEDKVLPDF SHMQSMNTQS TAEFPDVNFL SPETTDAEYI DMSAVLDGTM PSEADAFSPD 420 PDGEMLDGVH KLPGINDAFW EQFLTANHGD TDEINSCSVD GEMTKDQELQ LGKENAWDKT 480 QNMNHLTEQM GLLASGSARS

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEGGARGAAS SITNSGSSSL PPFLSKTYDM VDDPSTDSIV SWGSRNNSFV VRNVALFASD  60
LLPKYFKHNN FSSFVRQLNT YGFKKVDPDQ WEFANEGFLR GQKHLLRSIS RRKPAHMHSY  120
QQPEVQSSTV GACIEVGKFG LDEEVERLKR DKNVLMQELV RLRQQQQATD HQLQNVGQRV  180
QVMEQRQQQM MSFLAKAMHS PGFLSHLVQQ QNEGKRRITV GNKKRRLPRQ GKNPTAEHGI  240
NSPDGRMVKY QPSMNEAAKA MLQQILKMNT SPRLQPGVCY PDAFMFNDVP SSKLDSGRNF  300
RRISEVAHAE VPPSAQSFML EETGFSVTCP SEAISEIQSS PLVVANDAKA AQFSETKRQS  360
PSEDKVLPDF SHMQSMNTQS TAEFPDVNFL SPETTDAEYI DMSAVLDGTM PSEADAFSPD  420
PDGEMLDGVH KLPGINDAFW EQFLTANHGD TDEINSCSVD GEMTKDQELQ LGKENAWDKT  480
QNMNHLTEQM GLLASGSARS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	9e-26	15	112	12	120	Heat shock factor protein 1
5d5u_B	1e-25	15	112	21	129	Heat shock factor protein 1
5d5v_B	1e-25	15	112	21	129	Heat shock factor protein 1
5d5v_D	1e-25	15	112	21	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888349.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888349.1	0.0	heat stress transcription factor A-1e-like isoform X1
Swissprot	Q84T61	1e-151	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1C7A887	0.0	A0A1C7A887_MORAL; Heat stress transcription factor A-1
STRING	EMJ13033	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1843	31	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-138	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]