PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 787aa MW: 90440.3 Da PI: 8.1569

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015888263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.2	7.3e-20	71	146	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY YAk++GF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+++ + ++HnH+l XP_015888263.1 71 EFYTLYAKRTGFKIRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCPALIRVQRRDSGKWVIDLFLKDHNHDLG 146 6*************************************876..............589*************************995 PP
2	FAR1	68.2	2e-21	226	301	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF++r+ + +sk +g+it+r+fvCskeg+++++ r gC a +++k++++g+w+v++l+++HnHel+ XP_015888263.1 226 QFYQAYAANAGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHPS--------------RLGCGAFMRIKRQDSGRWVVDRLQKDHNHELN 301 6*************************************9994..............789*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-15	71	146	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.7E-17	226	301	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-27	401	493	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.348	663	711	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-8	668	708	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.7E-7	686	713	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MGVESSSSHF TNIKSLGPDP NSQECGNIMV VKAYPVGMVP AMNHVNGEDE GESSLEPYVG 60 LEFDSAEDAR EFYTLYAKRT GFKIRTGQLY RSRTDGTVSS RRFVCSKEGF QLNSRTGCPA 120 LIRVQRRDSG KWVIDLFLKD HNHDLGPMGE NNPPTLQRKI SLATTKPVLD VSHRPRIKSV 180 EEIGDGRPCP SGVINAKRLK REGDDMQSKV APFAGLEFNS ANDGYQFYQA YAANAGFRIR 240 IGQLFRSKLD GSITSRRFVC SKEGFQHPSR LGCGAFMRIK RQDSGRWVVD RLQKDHNHEL 300 NYQLEVDKKS PTSSKRLLEE ESGGLESEDI FNINSGNLVK RSRENHIGSD WYRVLLEYFQ 360 NRQAEDTGFF YAVEVDNGSC MSIFWADGRS RFSCSQFGDT VIFDTSYRKS IYLVPFATFV 420 GVNHHKQPVL LGCALIADES VESFTWLFQT WLRAMSGRRP FSIIADQDKV IQQAIRQVFP 480 GTHHRFSLWQ MKAKEREYLN LMDGAFKYEY EKCIYESRTT DEFDTAWNGL LHRYGLIDNA 540 WLTEMYQKRE NWVPAYLRGT FFAGIPLNET TESFFGAFLN AQTPLVEFVS RYERGIERRR 600 EAERREDFNT FNLQAFLQTK EPVEEQCRRL YTLTVFKIFQ KEVLQSYSYL GFKIYEEGPV 660 SRYLVRKGGN DNEKCMVTIG VSNLSVACSC QMFEFEGLLC RHILRVFQIL DIKEVPSRYI 720 LHRWTKNAEY GTIHDLESAG SPQELKSLML WSLRDTASKY IEAGATSLDK HKLAYEIMRE 780 GGRKLGW

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MGVESSSSHF TNIKSLGPDP NSQECGNIMV VKAYPVGMVP AMNHVNGEDE GESSLEPYVG  60
LEFDSAEDAR EFYTLYAKRT GFKIRTGQLY RSRTDGTVSS RRFVCSKEGF QLNSRTGCPA  120
LIRVQRRDSG KWVIDLFLKD HNHDLGPMGE NNPPTLQRKI SLATTKPVLD VSHRPRIKSV  180
EEIGDGRPCP SGVINAKRLK REGDDMQSKV APFAGLEFNS ANDGYQFYQA YAANAGFRIR  240
IGQLFRSKLD GSITSRRFVC SKEGFQHPSR LGCGAFMRIK RQDSGRWVVD RLQKDHNHEL  300
NYQLEVDKKS PTSSKRLLEE ESGGLESEDI FNINSGNLVK RSRENHIGSD WYRVLLEYFQ  360
NRQAEDTGFF YAVEVDNGSC MSIFWADGRS RFSCSQFGDT VIFDTSYRKS IYLVPFATFV  420
GVNHHKQPVL LGCALIADES VESFTWLFQT WLRAMSGRRP FSIIADQDKV IQQAIRQVFP  480
GTHHRFSLWQ MKAKEREYLN LMDGAFKYEY EKCIYESRTT DEFDTAWNGL LHRYGLIDNA  540
WLTEMYQKRE NWVPAYLRGT FFAGIPLNET TESFFGAFLN AQTPLVEFVS RYERGIERRR  600
EAERREDFNT FNLQAFLQTK EPVEEQCRRL YTLTVFKIFQ KEVLQSYSYL GFKIYEEGPV  660
SRYLVRKGGN DNEKCMVTIG VSNLSVACSC QMFEFEGLLC RHILRVFQIL DIKEVPSRYI  720
LHRWTKNAEY GTIHDLESAG SPQELKSLML WSLRDTASKY IEAGATSLDK HKLAYEIMRE  780
GGRKLGW

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015888263.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015888263.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	W9RS14	0.0	W9RS14_9ROSA; Protein FAR1-RELATED SEQUENCE 7
STRING	XP_010105698.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]