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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015888163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | CPP | ||||||||
Protein Properties | Length: 796aa MW: 87109.5 Da PI: 6.4556 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.1 | 2.6e-16 | 494 | 532 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk XP_015888163.1 494 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 532 689**********************************96 PP | |||||||
2 | TCR | 47.3 | 4.1e-15 | 579 | 618 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+C kkYCeC++ g+ Cs +C+Ce+CkN XP_015888163.1 579 RHKRGCNCKKSSCTKKYCECYQGGVGCSISCRCEGCKNAF 618 589***********************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.6E-18 | 493 | 534 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.01 | 494 | 619 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.1E-11 | 496 | 531 | IPR005172 | CRC domain |
SMART | SM01114 | 7.6E-16 | 579 | 620 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.0E-11 | 581 | 617 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MDTPERNQIG TPLSKFEDSP VFNYINSLSP IKPVKSLNIT QTFSSLSFAT LPSVFTSPHV 60 SSHRESRFLR RHNSSDPSKR ESSPEIENKV CTNEGVVIDS AHLYNNRGEL NEIGETSVEP 120 QSGHSKFVIE LPRTLKYDCG SPDCDSTPCD ITADCASELI DPSTALVPYV QEASERCSSG 180 GEAHANFQGA CQIGLKKEGN VCDWESLISD AADLLIFNSP GCTEPFKGLI ENSLEPATRF 240 CTSVVAQFPE NDMIDGNRMH VVDPVSVEHH NTEDLSTQPR EACQMTEMEM PQDRLANTNS 300 NKGVVRNPTE IKDNEVEACM AFSCKSVFNL HRGIRRRCLD FEMAGARRKN LDDGSNCSSS 360 ISQSDEKITA NDTQLGSVKP GSDSTRRILP GIGLHLNALA ATSKDYVIIK SESFSSGRQP 420 SLPNTTASIH SPTDSQEPLD KSLILASSER DTDGAENGVL LEDGSQAPAI SEEFNQNSPK 480 KKRRRLENAG EGDSCKRCNC KKSKCLKLYC ECFAAGVYCI EPCSCQDCFN KPIHEDTVLA 540 TRKQIESRNP LAFAPKVIRS SDSVPEFGDE SNKTPASARH KRGCNCKKSS CTKKYCECYQ 600 GGVGCSISCR CEGCKNAFGK KDGSALTGTE AEPEEDETEA SEKSMVDKPL QKIEIQNNEE 660 QNPSSTLPIT PLQASRVPLI PLPLSSKSKP PRSSFFTMPS SSGLYTGQKL GKPNILRSQP 720 RFEKHIQVVP KNQEDEMPEI LRGDSSPNTT GIKTSSPNSK RISPPHCNFG SSPGRRTGRK 780 LILQSIPSFP SLTPRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-16 | 498 | 616 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-16 | 498 | 616 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 478 | 485 | PKKKRRRL |
2 | 479 | 484 | KKKRRR |
3 | 481 | 485 | KRRRL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015888163.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217586 | 8e-49 | AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888163.1 | 0.0 | protein tesmin/TSO1-like CXC 3 | ||||
TrEMBL | A0A2P5E385 | 0.0 | A0A2P5E385_PARAD; Lin-54-like protein | ||||
STRING | XP_008224266.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-150 | Tesmin/TSO1-like CXC domain-containing protein |