PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015887958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 200aa MW: 22020.8 Da PI: 6.1535 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 34 | 56 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H XP_015887958.1 34 YECTFCKRGFTNAQALGGHMNIH 56 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 32 | 60 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.23E-6 | 32 | 61 | No hit | No description |
PROSITE profile | PS50157 | 11.468 | 34 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0097 | 34 | 56 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 36 | 56 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MDSGKQQQGS SDSTSSEENE YRSEKQVKDL KRCYECTFCK RGFTNAQALG GHMNIHRKDR 60 AAANKAKHQT GSSTSSHGQI NSEDQSLSMA APRYYPAMES ANRNSYYPHM YFESSGSAGA 120 SNFPYNNSYY SIDDGGHSFI GSSRSSSSQT AAAAALTMNE ELMGANLSLR IDSAIWEDNE 180 VRRGVRNGDE VDLELRLGHD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015887958.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015887958.1 | 1e-148 | transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A061ENL3 | 9e-46 | A0A061ENL3_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative | ||||
STRING | EOY05962 | 2e-46 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43540.1 | 6e-16 | C2H2 family protein |