PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015887148.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | LBD | ||||||||
Protein Properties | Length: 89aa MW: 9968.2 Da PI: 6.5011 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 53.3 | 7.8e-17 | 1 | 57 | 45 | 101 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +l++lp + r +a++sl+yeA++r++dPvyG++g+i++l+qq++++++++a++++++ XP_015887148.1 1 MLQQLPIHLRVEAAESLYYEAKCRIEDPVYGCAGIISQLHQQIHNAESQVAKIRAQI 57 7999***********************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.5E-14 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 11.034 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MLQQLPIHLR VEAAESLYYE AKCRIEDPVY GCAGIISQLH QQIHNAESQV AKIRAQIAFL 60 NSNAHEMESN TNNLIQGNSK IGQSQFQTS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015887148.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024931664.1 | 6e-59 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 6e-18 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A059DJZ9 | 3e-28 | A0A059DJZ9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010025110.1 | 5e-29 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-20 | LOB domain-containing protein 24 |