PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015887123.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 362aa MW: 38812.9 Da PI: 8.4807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015887123.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.9e-11	295	340	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el+P+ +k s a++L +Av++Ik Lq XP_015887123.1 295 SIAERERRTRISGKLKKLQELVPNM----DKQTSYADMLDLAVQHIKGLQ 340 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.98	289	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-14	292	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.71E-11	293	344	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-13	294	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	295	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-12	295	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MYHSNSPSHS QKPMGPSGLT RYGSAPGSLL ATAVDSVIGG GADREFNTAA LRSPYCFSGD 60 SSSVTSESTC KVNSSPSSSV PPNKEQYQQH HNNKGLHRSY CLNEIASRVG SSSSSSSSSS 120 SSSLVRQKSS PAGLLSHLAA ATTENNGFSV TRGAGSYSSQ GGTNGGHGVS RLKSQLSFTG 180 QDSLSQISEV SENVVDVGSA DNGHQNAMHS YVTNSFGMDS WDNNTNSIVF SAPTSKRAKH 240 MDGDIYNCLN ILETQFSLPQ TTLEMATVEK LLQIPEDSVP CKIRAKRGCA THPRSIAERE 300 RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVQHIKGLQ NQVQNLHKEL ENCSCGCKQQ 360 TK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MYHSNSPSHS QKPMGPSGLT RYGSAPGSLL ATAVDSVIGG GADREFNTAA LRSPYCFSGD  60
SSSVTSESTC KVNSSPSSSV PPNKEQYQQH HNNKGLHRSY CLNEIASRVG SSSSSSSSSS  120
SSSLVRQKSS PAGLLSHLAA ATTENNGFSV TRGAGSYSSQ GGTNGGHGVS RLKSQLSFTG  180
QDSLSQISEV SENVVDVGSA DNGHQNAMHS YVTNSFGMDS WDNNTNSIVF SAPTSKRAKH  240
MDGDIYNCLN ILETQFSLPQ TTLEMATVEK LLQIPEDSVP CKIRAKRGCA THPRSIAERE  300
RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVQHIKGLQ NQVQNLHKEL ENCSCGCKQQ  360
TK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015887123.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015887123.1	0.0	transcription factor bHLH128 isoform X3
Swissprot	Q8H102	1e-101	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A2I4E8P9	1e-167	A0A2I4E8P9_JUGRE; transcription factor bHLH128-like isoform X1
TrEMBL	A0A314UI41	1e-167	A0A314UI41_PRUYE; Transcription factor bHLH128
STRING	XP_008380690.1	1e-166	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	2e-96	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]