PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886953.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 248aa MW: 29061.4 Da PI: 5.9498

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.1	5.4e-27	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e++ + ++ +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p XP_015886953.1 75 EFYEMYGRRMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKHANrLNRVLPSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHELNP 166 6*******************9****************999934444559********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.0E-24	75	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MMASTSDLEF SPNRNYRRWL DETFDGHDTA DDELSDTLDG NEDMIQSSTE NFPLTFEPFE 60 PVIGMEFQSA ENAREFYEMY GRRMGFTIRN NRTRRSLKDN AIIGREFVCS KEGFRAEKHA 120 NRLNRVLPSR PATREGCNAM LRIAAKDGGK WVIYGFVKEH NHELNPSNVP PRRSHRIAFC 180 EDEKDLKIRE LSTELHRERK KSAAYQEKLQ MVWRYIEEHT QRLSLKVDVI TKNMRELEAE 240 EQDSSSSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886953.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886953.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X3
Refseq	XP_024931436.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	F6HYS2	1e-151	F6HYS2_VITVI; Uncharacterized protein
STRING	VIT_05s0102g00400.t01	1e-152	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-47	FAR1 family protein