PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886951.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 262aa MW: 30808.5 Da PI: 6.521 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.9 | 6.1e-27 | 89 | 180 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e++ + ++ +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p XP_015886951.1 89 EFYEMYGRRMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKHANrLNRVLPSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHELNP 180 6*********************9********************999934444559**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-24 | 89 | 180 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MWTQLCISSQ HKRFMMASTS DLEFSPNRNY RRWLDETFDG HDTADDELSD TLDGNEDMIQ 60 SSTENFPLTF EPFEPVIGME FQSAENAREF YEMYGRRMGF TIRNNRTRRS LKDNAIIGRE 120 FVCSKEGFRA EKHANRLNRV LPSRPATREG CNAMLRIAAK DGGKWVIYGF VKEHNHELNP 180 SNVPPRRSHR IAFCEDEKDL KIRELSTELH RERKKSAAYQ EKLQMVWRYI EEHTQRLSLK 240 VDVITKNMRE LEAEEQDSSS SD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886951.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886952.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_024931431.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_024931433.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_024931434.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_024931435.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | A5BNB5 | 1e-149 | A5BNB5_VITVI; Uncharacterized protein | ||||
TrEMBL | F6HYS2 | 1e-151 | F6HYS2_VITVI; Uncharacterized protein | ||||
STRING | VIT_05s0102g00400.t01 | 1e-152 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15811 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-47 | FAR1 family protein |