PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886950.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

FAR1

Protein Properties

Length: 177aa MW: 20860.1 Da PI: 10.0402

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.1	1.1e-26	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ XP_015886950.1 12 FYDEYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHVKYDKSGKWVITKFVKDHNHPLV 100 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-24	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MQFDSEDAAK IFYDEYARRL GFVMRVMSCR RSERDGRILA RRLGCNKEGY CVSIRGKFGP 60 VRKPRPSTRE GCKAMIHVKY DKSGKWVITK FVKDHNHPLV VSPREARQTM DEKDKKIQEL 120 TTELRNKKRL CTTYQEQLTT FMKIVEEHSD LLSKKVQNVV SNLKEFECID QELSQHR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886950.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886948.1	1e-131	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_015886949.1	1e-131	protein FAR1-RELATED SEQUENCE 5-like isoform X3
Refseq	XP_015886950.1	1e-131	protein FAR1-RELATED SEQUENCE 5-like isoform X3
Refseq	XP_024931442.1	1e-131	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Swissprot	Q9SZL8	7e-22	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A251R2Y8	1e-119	A0A251R2Y8_PRUPE; Uncharacterized protein
TrEMBL	W9RFJ0	1e-119	W9RFJ0_9ROSA; Uncharacterized protein
STRING	XP_008222477.1	1e-120	(Prunus mume)
STRING	XP_010098449.1	1e-120	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-107	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]