PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886785.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 483aa MW: 52320.6 Da PI: 5.008

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.4e-05	378	415	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_015886785.1 378 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 415 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	366	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-5	376	419	No hit	No description
SuperFamily	SSF47459	6.28E-10	376	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-8	380	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MAEEFQAGIC GGNWWNSSRT AFTASPCSVG LNDLGSFGWP CDMVDIKARS SSSYGETNGS 60 VVCDTSIAFQ DVQKPQTTES ITDTNNSTTT DSILIDSTLQ MMGFGLSTSS TTSDLSQALL 120 SRSSSGRIEN SYHSMLQQDM GNKLNYRRES DEDSSQIHKD WSPENFSGGG GVGDDSSMMN 180 GFKPNQDFTL DQSSAGTGSV TTQGLSSGFP VVPASYGYAA STLLQGFFDG ESQPQQSFNN 240 RSMNYSSASN YGTNNNNSSN IVSPSWPRLV SPFLRSSQPK QHTVSGLNFT NNTPFWNASA 300 AGLNDIRASL FPTSSQSTYL AAPTIEDKPN CRNLTTKVNS NEDVQDSGSV AVKKSGNEPV 360 FKRPRIETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVL 420 STPYMKNGAP IHPLQSSEIK DSEGPKQDLK SRGLCLVPMS STFPVANETT PEFWTPTFGG 480 TYR

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MAEEFQAGIC GGNWWNSSRT AFTASPCSVG LNDLGSFGWP CDMVDIKARS SSSYGETNGS  60
VVCDTSIAFQ DVQKPQTTES ITDTNNSTTT DSILIDSTLQ MMGFGLSTSS TTSDLSQALL  120
SRSSSGRIEN SYHSMLQQDM GNKLNYRRES DEDSSQIHKD WSPENFSGGG GVGDDSSMMN  180
GFKPNQDFTL DQSSAGTGSV TTQGLSSGFP VVPASYGYAA STLLQGFFDG ESQPQQSFNN  240
RSMNYSSASN YGTNNNNSSN IVSPSWPRLV SPFLRSSQPK QHTVSGLNFT NNTPFWNASA  300
AGLNDIRASL FPTSSQSTYL AAPTIEDKPN CRNLTTKVNS NEDVQDSGSV AVKKSGNEPV  360
FKRPRIETPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD TASVLHEAIE YIKFLHDQVL  420
STPYMKNGAP IHPLQSSEIK DSEGPKQDLK SRGLCLVPMS STFPVANETT PEFWTPTFGG  480
TYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886785.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886785.1	0.0	transcription factor bHLH112 isoform X2
TrEMBL	D7SSM5	0.0	D7SSM5_VITVI; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	8e-57	bHLH family protein