PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015886660.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB_related
Protein Properties Length: 245aa    MW: 26959.4 Da    PI: 8.2525
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015886660.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-075296344
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                      WT+eE+ +l ++ +++ ++    + ++Ia  ++ ++t  ++ +r 
   XP_015886660.1 52 DWTPEEQAILEEGLAKHSSEsniiRYAKIAMQLQ-NKTVRDVALRC 96
                     7*********************************.*****999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.35E-645107IPR009057Homeodomain-like
SMARTSM007178.2E-549102IPR001005SANT/Myb domain
PfamPF002492.3E-65197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-653110IPR009057Homeodomain-like
CDDcd001672.79E-65397No hitNo description
PfamPF125791.2E-16187219IPR022228Protein of unknown function DUF3755
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MANPSGNHQE PSHAASSFNG GNPNNGNSAP VAGPESSGAA MTMKHNPGIS MDWTPEEQAI  60
LEEGLAKHSS ESNIIRYAKI AMQLQNKTVR DVALRCRWMT KKENSKRRKE EHNLSRKNKD  120
KKERVTDSST KSSHFAPRSS VPPYAPPIIP MDSDDGISYK AIGGATGELL EQNAQALTQI  180
SANIANFQIQ DNINLFCQAR DSILKIMNDL NDMPEVMKQM PPLPVKLNEE LANTILPRTS  240
HSMQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115122RKNKDKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015886660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015886660.10.0uncharacterized protein LOC107421838
TrEMBLM5XRQ91e-147M5XRQ9_PRUPE; Uncharacterized protein
STRINGXP_008222415.11e-148(Prunus mume)
STRINGEMJ287521e-148(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF365722