PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015886566.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

Trihelix

Protein Properties

Length: 355aa MW: 39349.6 Da PI: 9.8423

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015886566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.9	1.7e-20	58	148	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+++e+ aLi+ +r+++ +lrrg+lk+++W+ev++++ + ++++qC++k+e+l+kry+ + +++++ s+ ++++++f +++ XP_015886566.1 58 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQEVADAVarrcPAASPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVTSWVHFVRMD 148 8********************************99966556667799*********************97799999***9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-21	57	150	No hit	No description
SMART	SM00595	6.4E-10	66	155	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MASPPSSPPD SSPVTPVGPP QALPLALPAP PQAQLPAQPQ LPQAPPSTTS SRRLPPPCWS 60 HDETVALIDS YRDKWYSLRR GNLKATHWQE VADAVARRCP AASPPKTAVQ CRHKMEKLRK 120 RYRTEIQRAR SMPVSRFVTS WVHFVRMDSM EKGPKAAKPE NSDSAGEDDD HDNDDEEDDQ 180 ELYDELKYGS HTKSMNRLYR NGIGGSGGGS NSSSSGFRIR IPTGVSIAQP GNKNYVKVDS 240 KFGLNQNSNS NSVPTFGVAA KVLRDCGSGK PGVLGKREKD PVTEMVNAIK VLGDGFVRME 300 QMKMEMAREI ETMRMDMEMK RTEMILESQQ RIVEAFAKAV SEKKKKTKRM PSPES

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MASPPSSPPD SSPVTPVGPP QALPLALPAP PQAQLPAQPQ LPQAPPSTTS SRRLPPPCWS  60
HDETVALIDS YRDKWYSLRR GNLKATHWQE VADAVARRCP AASPPKTAVQ CRHKMEKLRK  120
RYRTEIQRAR SMPVSRFVTS WVHFVRMDSM EKGPKAAKPE NSDSAGEDDD HDNDDEEDDQ  180
ELYDELKYGS HTKSMNRLYR NGIGGSGGGS NSSSSGFRIR IPTGVSIAQP GNKNYVKVDS  240
KFGLNQNSNS NSVPTFGVAA KVLRDCGSGK PGVLGKREKD PVTEMVNAIK VLGDGFVRME  300
QMKMEMAREI ETMRMDMEMK RTEMILESQQ RIVEAFAKAV SEKKKKTKRM PSPES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015886566.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015886566.1	0.0	protein FIP2
TrEMBL	A0A2P5CCQ6	1e-159	A0A2P5CCQ6_PARAD; MADF domain containing protein
STRING	XP_009375369.1	1e-156	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-86	Trihelix family protein